PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
GhirA04G0009440.1 Alkaloid 7DLGT medium pass
GhirA04G0009450.1 Alkaloid 7DLGT medium pass
GhirA04G0011210.1 Alkaloid 7DLGT medium pass
GhirA04G0011210.2 Alkaloid 7DLGT medium pass
GhirA04G0011210.3 Alkaloid 7DLGT medium pass
GhirA04G0011210.4 Alkaloid 7DLGT medium pass
GhirA04G0015260.1 Alkaloid 7DLGT low borderline
GhirA04G0018310.1 Alkaloid 7DLGT low borderline
GhirA04G0018320.1 Alkaloid 7DLGT low borderline
GhirA05G0003270.1 Alkaloid 7DLGT low borderline
GhirA05G0003280.1 Alkaloid 7DLGT medium pass
GhirA05G0003360.1 Alkaloid 7DLGT low borderline
GhirA05G0005010.1 Alkaloid 7DLGT low borderline
GhirA05G0007130.1 Alkaloid 7DLGT low borderline
GhirA05G0011420.1 Alkaloid 7DLGT medium pass
GhirA05G0023850.1 Alkaloid 7DLGT high pass
GhirA05G0032620.1 Alkaloid 7DLGT high pass
GhirA05G0033220.1 Alkaloid 7DLGT medium pass
GhirA05G0035240.1 Alkaloid 7DLGT medium pass
GhirA05G0037580.1 Alkaloid 7DLGT high pass
GhirA05G0037590.1 Alkaloid 7DLGT medium pass
GhirA05G0039910.1 Alkaloid 7DLGT low borderline
GhirA05G0040140.1 Alkaloid 7DLGT medium pass
GhirA05G0044000.1 Alkaloid 7DLGT low borderline
GhirA05G0044010.1 Alkaloid 7DLGT low borderline
GhirA06G0002170.1 Alkaloid 7DLGT medium pass
GhirA06G0003330.1 Alkaloid 7DLGT low borderline
GhirA06G0006220.1 Alkaloid 7DLGT low borderline
GhirA06G0021110.1 Alkaloid 7DLGT low borderline
GhirA06G0022430.1 Alkaloid 7DLGT low borderline
GhirA07G0008480.1 Alkaloid 7DLGT low borderline
GhirA07G0011520.1 Alkaloid 7DLGT medium pass
GhirA07G0011530.1 Alkaloid 7DLGT medium pass
GhirA07G0011580.1 Alkaloid 7DLGT high pass
GhirA07G0011590.1 Alkaloid 7DLGT low borderline
GhirA07G0011600.1 Alkaloid 7DLGT medium pass
GhirA07G0012240.1 Alkaloid 7DLGT low borderline
GhirA07G0015740.1 Alkaloid 7DLGT medium pass
GhirA07G0020830.1 Alkaloid 7DLGT medium pass
GhirA07G0020910.1 Alkaloid 7DLGT medium pass
GhirA07G0022200.1 Alkaloid 7DLGT low borderline
GhirA07G0024930.1 Alkaloid 7DLGT low borderline
GhirA07G0024950.1 Alkaloid 7DLGT low borderline
GhirA07G0024960.1 Alkaloid 7DLGT medium pass
GhirA07G0025280.1 Alkaloid 7DLGT medium pass
GhirA08G0009020.1 Alkaloid 7DLGT low borderline
GhirA08G0010130.1 Alkaloid 7DLGT low borderline
GhirA09G0001110.1 Alkaloid 7DLGT low borderline
GhirA09G0006410.1 Alkaloid 7DLGT low borderline
GhirA09G0016090.1 Alkaloid 7DLGT low borderline