PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

4579
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
GhirD04G0001420.1 Rosmarinic Acid 4CL low borderline
GhirD04G0020430.1 Rosmarinic Acid 4CL medium pass
GhirD05G0000600.1 Rosmarinic Acid 4CL medium pass
GhirD05G0012030.1 Rosmarinic Acid 4CL low borderline
GhirD05G0015590.1 Rosmarinic Acid 4CL medium pass
GhirD05G0025670.1 Rosmarinic Acid 4CL medium pass
GhirD05G0036250.1 Rosmarinic Acid 4CL low borderline
GhirD05G0036250.2 Rosmarinic Acid 4CL low borderline
GhirD06G0005100.1 Rosmarinic Acid 4CL low borderline
GhirD06G0022310.1 Rosmarinic Acid 4CL low borderline
GhirD07G0006410.1 Rosmarinic Acid 4CL medium pass
GhirD07G0006410.2 Rosmarinic Acid 4CL medium pass
GhirD07G0010290.1 Rosmarinic Acid 4CL low borderline
GhirD07G0010290.2 Rosmarinic Acid 4CL low borderline
GhirD07G0010290.3 Rosmarinic Acid 4CL low borderline
GhirD07G0015080.1 Rosmarinic Acid 4CL low borderline
GhirD07G0015080.2 Rosmarinic Acid 4CL low borderline
GhirD08G0004870.1 Rosmarinic Acid 4CL medium pass
GhirD08G0018810.1 Rosmarinic Acid 4CL medium pass
GhirD08G0021880.1 Rosmarinic Acid 4CL medium pass
GhirD09G0006850.1 Rosmarinic Acid 4CL low borderline
GhirD09G0007880.1 Rosmarinic Acid 4CL medium pass
GhirD09G0016540.1 Rosmarinic Acid 4CL medium pass
GhirD09G0016540.2 Rosmarinic Acid 4CL medium pass
GhirD09G0022700.1 Rosmarinic Acid 4CL medium pass
GhirD09G0027650.1 Rosmarinic Acid 4CL medium pass
GhirD10G0005580.1 Rosmarinic Acid 4CL medium pass
GhirD10G0007710.1 Rosmarinic Acid 4CL low borderline
GhirD10G0007710.2 Rosmarinic Acid 4CL medium pass
GhirD10G0015730.1 Rosmarinic Acid 4CL low borderline
GhirD10G0015730.2 Rosmarinic Acid 4CL low borderline
GhirD10G0015730.3 Rosmarinic Acid 4CL low borderline
GhirD10G0016570.1 Rosmarinic Acid 4CL medium pass
GhirD10G0020600.1 Rosmarinic Acid 4CL medium pass
GhirD11G0002680.1 Rosmarinic Acid 4CL low borderline
GhirD11G0002680.2 Rosmarinic Acid 4CL low borderline
GhirD11G0002680.3 Rosmarinic Acid 4CL low borderline
GhirD11G0004320.1 Rosmarinic Acid 4CL medium pass
GhirD11G0019440.1 Rosmarinic Acid 4CL medium pass
GhirD11G0035790.1 Rosmarinic Acid 4CL low borderline
GhirD12G0017220.1 Rosmarinic Acid 4CL medium pass
GhirD12G0026800.1 Rosmarinic Acid 4CL low borderline
GhirD13G0010560.1 Rosmarinic Acid 4CL low borderline
GhirD13G0021430.1 Rosmarinic Acid 4CL medium pass
GhirD13G0028050.1 Rosmarinic Acid 4CL medium pass
GhirA01G0004250.1 Rosmarinic Acid C4H low borderline
GhirA01G0004250.2 Rosmarinic Acid C4H low borderline
GhirA01G0004260.1 Rosmarinic Acid C4H low borderline
GhirA01G0004270.1 Rosmarinic Acid C4H low borderline
GhirA01G0004280.1 Rosmarinic Acid C4H low borderline