PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GhirD11G0028030.1 Alkaloid H6H low borderline
GhirD12G0000310.1 Alkaloid H6H low borderline
GhirD12G0000310.3 Alkaloid H6H low borderline
GhirD12G0000310.4 Alkaloid H6H low borderline
GhirD12G0000310.5 Alkaloid H6H low borderline
GhirD12G0006580.1 Alkaloid H6H high pass
GhirD12G0024170.1 Alkaloid H6H medium borderline
GhirD12G0027970.1 Alkaloid H6H medium borderline
GhirD13G0001880.1 Alkaloid H6H low borderline
GhirD13G0006150.1 Alkaloid H6H medium borderline
GhirD13G0006150.2 Alkaloid H6H medium borderline
GhirD13G0024720.1 Alkaloid H6H low borderline
GhirD13G0024730.1 Alkaloid H6H low borderline
GhirD13G0024740.1 Alkaloid H6H low borderline
GhirD13G0024750.1 Alkaloid H6H low borderline
GhirD13G0024760.1 Alkaloid H6H low borderline
GhirD13G0024770.1 Alkaloid H6H low borderline
GhirD13G0024780.1 Alkaloid H6H low borderline
GhirD13G0024790.1 Alkaloid H6H low borderline
GhirD13G0024800.1 Alkaloid H6H low borderline
GhirD13G0024810.1 Alkaloid H6H low borderline
GhirD13G0024820.1 Alkaloid H6H low borderline
GhirD13G0024830.1 Alkaloid H6H low borderline
GhirD13G0024840.1 Alkaloid H6H low borderline
GhirD13G0024860.1 Alkaloid H6H low borderline
GhirD13G0024870.1 Alkaloid H6H low borderline
GhirD13G0024880.1 Alkaloid H6H low borderline
GhirD13G0024890.1 Alkaloid H6H low borderline
GhirD13G0025610.1 Alkaloid H6H medium pass
GhirA01G0009300.1 Alkaloid IO medium borderline
GhirA01G0021410.1 Alkaloid IO medium borderline
GhirA02G0007340.1 Alkaloid IO medium borderline
GhirA02G0007340.2 Alkaloid IO medium borderline
GhirA02G0007340.3 Alkaloid IO medium borderline
GhirA02G0011040.1 Alkaloid IO medium borderline
GhirA02G0015370.1 Alkaloid IO medium borderline
GhirA03G0006320.1 Alkaloid IO low borderline
GhirA04G0009160.1 Alkaloid IO medium borderline
GhirA04G0009170.1 Alkaloid IO medium borderline
GhirA04G0014690.1 Alkaloid IO low borderline
GhirA04G0016600.1 Alkaloid IO medium borderline
GhirA05G0007140.1 Alkaloid IO medium borderline
GhirA05G0011510.1 Alkaloid IO medium pass
GhirA05G0020920.1 Alkaloid IO medium borderline
GhirA05G0027730.1 Alkaloid IO low borderline
GhirA05G0027750.1 Alkaloid IO medium borderline
GhirA06G0000830.2 Alkaloid IO medium pass
GhirA06G0001490.1 Alkaloid IO medium borderline
GhirA06G0001510.1 Alkaloid IO medium borderline
GhirA06G0022910.1 Alkaloid IO medium borderline