PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
GhirA07G0017900.1 Alkaloid IO medium borderline
GhirA08G0001480.1 Alkaloid IO low borderline
GhirA08G0012370.1 Alkaloid IO medium borderline
GhirA08G0014260.1 Alkaloid IO medium borderline
GhirA09G0021920.1 Alkaloid IO medium borderline
GhirA11G0019990.1 Alkaloid IO low borderline
GhirA11G0036230.1 Alkaloid IO medium borderline
GhirA12G0003230.1 Alkaloid IO low borderline
GhirA12G0029050.1 Alkaloid IO medium borderline
GhirA12G0029070.1 Alkaloid IO medium borderline
GhirA12G0029080.1 Alkaloid IO medium borderline
GhirA13G0013510.1 Alkaloid IO medium borderline
GhirD01G0023210.1 Alkaloid IO medium borderline
GhirD02G0008280.1 Alkaloid IO medium borderline
GhirD02G0008310.1 Alkaloid IO medium borderline
GhirD02G0008310.2 Alkaloid IO medium borderline
GhirD02G0010980.1 Alkaloid IO low borderline
GhirD02G0010980.2 Alkaloid IO low borderline
GhirD02G0010980.3 Alkaloid IO low borderline
GhirD02G0010980.4 Alkaloid IO low borderline
GhirD03G0010050.1 Alkaloid IO medium borderline
GhirD04G0012450.1 Alkaloid IO low borderline
GhirD04G0012920.1 Alkaloid IO medium borderline
GhirD04G0021060.1 Alkaloid IO medium pass
GhirD05G0004580.1 Alkaloid IO medium borderline
GhirD05G0007450.1 Alkaloid IO medium borderline
GhirD05G0011900.1 Alkaloid IO medium pass
GhirD05G0016340.1 Alkaloid IO low borderline
GhirD05G0021620.1 Alkaloid IO medium borderline
GhirD05G0028560.1 Alkaloid IO low borderline
GhirD05G0042660.1 Alkaloid IO medium borderline
GhirD06G0001190.1 Alkaloid IO low borderline
GhirD06G0001210.1 Alkaloid IO low borderline
GhirD06G0001270.1 Alkaloid IO medium borderline
GhirD06G0001320.1 Alkaloid IO medium borderline
GhirD06G0001330.1 Alkaloid IO medium borderline
GhirD06G0001390.1 Alkaloid IO medium borderline
GhirD06G0001390.2 Alkaloid IO medium borderline
GhirD06G0017750.1 Alkaloid IO medium borderline
GhirD06G0024930.1 Alkaloid IO medium borderline
GhirD07G0014060.1 Alkaloid IO medium borderline
GhirD08G0013370.1 Alkaloid IO medium borderline
GhirD08G0015600.1 Alkaloid IO medium borderline
GhirD08G0015600.2 Alkaloid IO medium borderline
GhirD08G0016510.1 Alkaloid IO low borderline
GhirD09G0021640.2 Alkaloid IO medium borderline
GhirD09G0022250.1 Alkaloid IO medium borderline
GhirD10G0026230.1 Alkaloid IO medium borderline
GhirD10G0028560.1 Alkaloid IO medium borderline
GhirD10G0028580.1 Alkaloid IO medium borderline