PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirD12G0009780.1 Flavonoid IFS medium borderline
GhirD12G0016230.1 Flavonoid IFS low borderline
GhirD12G0016930.1 Flavonoid IFS medium borderline
GhirD12G0018980.1 Flavonoid IFS low borderline
GhirD12G0020970.1 Flavonoid IFS medium borderline
GhirD12G0021430.1 Flavonoid IFS medium borderline
GhirD12G0023160.1 Flavonoid IFS low borderline
GhirD12G0023540.1 Flavonoid IFS medium borderline
GhirD12G0023550.1 Flavonoid IFS medium borderline
GhirD12G0025280.1 Flavonoid IFS medium borderline
GhirD12G0025790.1 Flavonoid IFS low borderline
GhirD12G0026140.1 Flavonoid IFS low borderline
GhirD12G0029980.1 Flavonoid IFS medium borderline
GhirD13G0002650.1 Flavonoid IFS medium borderline
GhirD13G0003410.1 Flavonoid IFS medium borderline
GhirD13G0004280.1 Flavonoid IFS low borderline
GhirD13G0004280.2 Flavonoid IFS low borderline
GhirD13G0004280.3 Flavonoid IFS low borderline
GhirD13G0004280.5 Flavonoid IFS low borderline
GhirD13G0004280.6 Flavonoid IFS low borderline
GhirD13G0004290.1 Flavonoid IFS low borderline
GhirD13G0004290.2 Flavonoid IFS low borderline
GhirD13G0004310.1 Flavonoid IFS low borderline
GhirD13G0004320.1 Flavonoid IFS low borderline
GhirD13G0004320.2 Flavonoid IFS low borderline
GhirD13G0004590.1 Flavonoid IFS low borderline
GhirD13G0004590.2 Flavonoid IFS low borderline
GhirD13G0007200.1 Flavonoid IFS low borderline
GhirD13G0010390.1 Flavonoid IFS low borderline
GhirD13G0010690.1 Flavonoid IFS low borderline
GhirD13G0014260.1 Flavonoid IFS low borderline
GhirD13G0014470.1 Flavonoid IFS low borderline
GhirD13G0014850.1 Flavonoid IFS medium borderline
GhirD13G0016280.1 Flavonoid IFS medium borderline
GhirD13G0016310.1 Flavonoid IFS medium borderline
GhirD13G0018860.1 Flavonoid IFS medium borderline
GhirD13G0024180.1 Flavonoid IFS medium borderline
Ghirscaffold_3860002850.1 Flavonoid IFS low borderline
GhirA01G0023450.1 Flavonoid PAL high pass
GhirA04G0009820.1 Flavonoid PAL high pass
GhirA04G0009830.1 Flavonoid PAL high pass
GhirA06G0008330.1 Flavonoid PAL high pass
GhirA09G0016590.1 Flavonoid PAL high pass
GhirA10G0022560.1 Flavonoid PAL high pass
GhirA11G0031510.1 Flavonoid PAL low borderline
GhirA11G0036440.1 Flavonoid PAL high pass
GhirA11G0036440.2 Flavonoid PAL high pass
GhirD01G0025110.1 Flavonoid PAL high pass
GhirD04G0013670.1 Flavonoid PAL high pass
GhirD04G0013680.1 Flavonoid PAL high pass