PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirD01G0006070.1 Flavonoid UFGT high pass
GhirD01G0006080.1 Flavonoid UFGT high pass
GhirD01G0006190.1 Flavonoid UFGT high pass
GhirD01G0008380.1 Flavonoid UFGT low borderline
GhirD01G0008390.1 Flavonoid UFGT medium pass
GhirD01G0010480.1 Flavonoid UFGT medium pass
GhirD01G0015150.1 Flavonoid UFGT medium pass
GhirD01G0016270.1 Flavonoid UFGT high pass
GhirD01G0016740.1 Flavonoid UFGT medium pass
GhirD01G0023120.1 Flavonoid UFGT medium pass
GhirD02G0000780.1 Flavonoid UFGT medium pass
GhirD02G0000790.1 Flavonoid UFGT medium pass
GhirD02G0000800.1 Flavonoid UFGT medium pass
GhirD02G0001680.1 Flavonoid UFGT medium pass
GhirD02G0002420.1 Flavonoid UFGT medium pass
GhirD02G0002440.1 Flavonoid UFGT medium pass
GhirD02G0002450.1 Flavonoid UFGT medium pass
GhirD02G0002470.1 Flavonoid UFGT medium pass
GhirD02G0002480.1 Flavonoid UFGT medium pass
GhirD02G0002500.1 Flavonoid UFGT medium pass
GhirD02G0002510.1 Flavonoid UFGT medium pass
GhirD02G0004490.1 Flavonoid UFGT medium pass
GhirD02G0007670.1 Flavonoid UFGT high pass
GhirD02G0007680.1 Flavonoid UFGT high pass
GhirD02G0024670.1 Flavonoid UFGT medium pass
GhirD02G0024680.1 Flavonoid UFGT medium pass
GhirD02G0024690.1 Flavonoid UFGT medium pass
GhirD03G0001730.1 Flavonoid UFGT medium pass
GhirD03G0004230.1 Flavonoid UFGT medium pass
GhirD03G0004250.1 Flavonoid UFGT high pass
GhirD03G0004260.1 Flavonoid UFGT high pass
GhirD03G0004270.1 Flavonoid UFGT high pass
GhirD03G0004280.1 Flavonoid UFGT high pass
GhirD03G0004300.1 Flavonoid UFGT medium pass
GhirD03G0004330.1 Flavonoid UFGT high pass
GhirD03G0004340.1 Flavonoid UFGT high pass
GhirD03G0005250.1 Flavonoid UFGT high pass
GhirD03G0005670.1 Flavonoid UFGT high pass
GhirD03G0009250.1 Flavonoid UFGT high pass
GhirD03G0011610.1 Flavonoid UFGT high pass
GhirD03G0011640.1 Flavonoid UFGT high pass
GhirD03G0013700.1 Flavonoid UFGT high pass
GhirD03G0016080.1 Flavonoid UFGT medium pass
GhirD03G0016570.1 Flavonoid UFGT high pass
GhirD03G0017440.1 Flavonoid UFGT high pass
GhirD04G0001130.1 Flavonoid UFGT high pass
GhirD04G0001140.1 Flavonoid UFGT high pass
GhirD04G0001150.1 Flavonoid UFGT high pass
GhirD04G0005300.1 Flavonoid UFGT medium pass
GhirD04G0005470.1 Flavonoid UFGT medium pass