PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirA01G0021730.1 Flavonoid ANR medium borderline
GhirA02G0014530.1 Flavonoid ANR medium borderline
GhirA02G0014910.1 Flavonoid ANR medium borderline
GhirA05G0004500.1 Flavonoid ANR medium borderline
GhirA05G0007340.1 Flavonoid ANR medium borderline
GhirA05G0017740.1 Flavonoid ANR medium borderline
GhirA05G0020350.1 Flavonoid ANR medium borderline
GhirA05G0021360.1 Flavonoid ANR medium borderline
GhirA05G0021360.2 Flavonoid ANR medium borderline
GhirA05G0029390.1 Flavonoid ANR medium borderline
GhirA05G0038790.1 Flavonoid ANR low borderline
GhirA05G0038790.2 Flavonoid ANR low borderline
GhirA06G0000880.1 Flavonoid ANR medium borderline
GhirA06G0008980.1 Flavonoid ANR low borderline
GhirA06G0008980.2 Flavonoid ANR low borderline
GhirA06G0019080.1 Flavonoid ANR low borderline
GhirA06G0019100.1 Flavonoid ANR low borderline
GhirA07G0014000.1 Flavonoid ANR medium borderline
GhirA07G0014000.2 Flavonoid ANR medium borderline
GhirA07G0015730.1 Flavonoid ANR medium borderline
GhirA07G0016460.1 Flavonoid ANR medium borderline
GhirA07G0016480.1 Flavonoid ANR medium borderline
GhirA07G0017540.1 Flavonoid ANR low borderline
GhirA11G0008300.1 Flavonoid ANR medium borderline
GhirA11G0008300.2 Flavonoid ANR medium borderline
GhirA11G0009040.1 Flavonoid ANR medium borderline
GhirA12G0005590.1 Flavonoid ANR medium borderline
GhirA12G0005590.2 Flavonoid ANR medium borderline
GhirA12G0005590.3 Flavonoid ANR medium borderline
GhirA12G0025920.1 Flavonoid ANR medium borderline
GhirD01G0007810.1 Flavonoid ANR medium borderline
GhirD01G0007810.2 Flavonoid ANR medium borderline
GhirD01G0010950.2 Flavonoid ANR low borderline
GhirD03G0004730.1 Flavonoid ANR medium borderline
GhirD03G0005940.1 Flavonoid ANR medium borderline
GhirD03G0005960.1 Flavonoid ANR medium borderline
GhirD04G0006680.1 Flavonoid ANR low borderline
GhirD05G0004730.1 Flavonoid ANR medium borderline
GhirD05G0004730.2 Flavonoid ANR medium borderline
GhirD05G0004730.3 Flavonoid ANR medium borderline
GhirD05G0007650.1 Flavonoid ANR medium borderline
GhirD05G0013020.1 Flavonoid ANR medium borderline
GhirD05G0018390.1 Flavonoid ANR medium borderline
GhirD05G0020990.1 Flavonoid ANR medium borderline
GhirD05G0038370.1 Flavonoid ANR low borderline
GhirD05G0038400.1 Flavonoid ANR low borderline
GhirD06G0000650.1 Flavonoid ANR medium borderline
GhirD06G0009380.1 Flavonoid ANR low borderline
GhirD06G0020830.1 Flavonoid ANR low borderline
GhirD06G0020840.1 Flavonoid ANR low borderline