Gossypium hirsutum (gossypium_hirsutum)
Imported from atlas release summary for Gossypium hirsutum.
5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
11461
Family-Level Calls
C4H
6.81%
BAHD
6.61%
C3'H/CYP98A
5.75%
IFS
3.94%
4CL
3.8%
CYP76
3.59%
POD
3.59%
F3H
3.53%
Other Families
62.38%
More Families (98)
T3O
397
3.46%
UGT
341
2.98%
NMT
336
2.93%
UFGT
335
2.92%
7DLGT
327
2.85%
BR6OX2/CYP85A2
220
1.92%
DWF4/CYP90B1
210
1.83%
STR
199
1.74%
F3'H/CYP75B
198
1.73%
CODM/T6ODM
194
1.69%
H6H
193
1.68%
CAS
180
1.57%
CAD
175
1.53%
LAC
157
1.37%
CYP71
156
1.36%
CYP90D1
150
1.31%
TRI/TRII
136
1.19%
SMT1/SMT2/SMT3
135
1.18%
7DLH
129
1.13%
TPS
129
1.13%
GES
125
1.09%
GS
110
0.96%
CSE
110
0.96%
HCT
106
0.92%
RAS
96
0.84%
IFR
95
0.83%
COMT
91
0.79%
BBE
87
0.76%
T16H
84
0.73%
NCS
80
0.7%
IO
80
0.7%
PYKS
73
0.64%
ANR
69
0.6%
CCR
66
0.58%
COR
64
0.56%
16OMT
63
0.55%
SGD
62
0.54%
ROT3/CYP90C1
62
0.54%
TAT
59
0.51%
CPD/CYP90A1
58
0.51%
PMT
57
0.5%
FNS
57
0.5%
F3'5'H/CYP75A
56
0.49%
F5H/CYP84A
52
0.45%
SLS
51
0.44%
G8O/G8H
51
0.44%
BR6OX1/CYP85A1
49
0.43%
PAL
48
0.42%
CYP51G1
43
0.38%
CNMT
42
0.37%
8HGO
41
0.36%
MVD
39
0.34%
GGPPS
37
0.32%
DFR
35
0.31%
SQE
34
0.3%
ANS/LDOX
33
0.29%
CPR
27
0.24%
CCoAOMT
25
0.22%
LAMT
24
0.21%
FPPS
24
0.21%
MPO
23
0.2%
CHS
22
0.19%
SMO1/SMO2
19
0.17%
ISY
18
0.16%
SQS/FDFT1
18
0.16%
HMGR
18
0.16%
HMGS
17
0.15%
AACT
17
0.15%
TYDC_DDC
16
0.14%
CYP719
16
0.14%
CYP80B1
16
0.14%
HPPR
16
0.14%
MVK
15
0.13%
ADC
13
0.11%
CHI
13
0.11%
DXS
13
0.11%
DET2
11
0.1%
MCT/IspD
11
0.1%
DXR
11
0.1%
TDC
10
0.09%
FLS
7
0.06%
MDS/IspF
7
0.06%
HDR/IspH
7
0.06%
HDS/IspG
7
0.06%
CYP80F1
6
0.05%
ODC
5
0.04%
DWF5
5
0.04%
HYD1
5
0.04%
CPI1
4
0.03%
XMT_MXMT_DXMT
3
0.03%
FK
3
0.03%
DWF1
3
0.03%
6OMT_4OMT_SOMT
2
0.02%
DWF7
2
0.02%
CMK/IspE
2
0.02%
IDI
2
0.02%
PMK
2
0.02%
GPPS
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1367 | 21 | BAHD (612) | View species results |
| Alkaloid pathway | 1056 | 25 | NMT (183) | View species results |
| Phenylpropanoid pathway | 975 | 12 | POD (389) | View species results |
| Flavonoid pathway | 507 | 11 | UFGT (306) | View species results |
| Rosmarinic acid pathway | 363 | 7 | C4H (130) | View species results |
| Steroid pathway | 311 | 12 | CAS (159) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 4387 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 960 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| GhirA01G0021910.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA01G0021910.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA01G0023870.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA02G0012370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA02G0012860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA02G0012860.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA02G0012860.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA02G0013400.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA02G0013680.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA02G0013680.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA02G0014180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA02G0019750.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA02G0019760.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA03G0010660.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA03G0019630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA03G0019640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA04G0003140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0002230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0007360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0012180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0013080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0013090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0013090.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0013100.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0013100.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0013110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0013960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0029300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0030860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0035990.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0037080.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0038280.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0038290.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0041350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA05G0042650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA06G0006660.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA07G0000340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA07G0005910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA07G0006730.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| GhirA07G0006740.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA07G0007030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA07G0011800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA07G0011810.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA07G0011820.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA07G0012960.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GhirA07G0014820.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA07G0014840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA08G0003370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA08G0009950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GhirA08G0013160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |