PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirD06G0001460.1 Alkaloid T16H medium borderline
GhirD07G0010850.1 Alkaloid T16H medium borderline
GhirD07G0010860.1 Alkaloid T16H medium borderline
GhirD07G0010870.1 Alkaloid T16H medium borderline
GhirD09G0014390.1 Alkaloid T16H medium borderline
GhirD10G0000610.1 Alkaloid T16H medium borderline
GhirD10G0021420.1 Alkaloid T16H medium borderline
GhirD10G0023330.1 Alkaloid T16H medium borderline
GhirD10G0023810.1 Alkaloid T16H medium borderline
GhirD10G0029550.1 Alkaloid T16H medium borderline
GhirD11G0004240.1 Alkaloid T16H medium borderline
GhirD11G0026090.1 Alkaloid T16H medium borderline
GhirD12G0010250.1 Alkaloid T16H medium borderline
GhirD12G0013150.1 Alkaloid T16H medium borderline
GhirD12G0016320.1 Alkaloid T16H medium borderline
GhirD12G0016930.1 Alkaloid T16H medium borderline
GhirD12G0021440.1 Alkaloid T16H medium borderline
GhirD13G0007200.1 Alkaloid T16H low borderline
GhirD13G0016300.1 Alkaloid T16H medium borderline
GhirD13G0018850.1 Alkaloid T16H medium borderline
GhirD13G0028310.1 Alkaloid T16H medium borderline
GhirA01G0005690.1 Alkaloid T3O low borderline
GhirA01G0006650.1 Alkaloid T3O medium borderline
GhirA01G0006660.1 Alkaloid T3O medium borderline
GhirA01G0008230.1 Alkaloid T3O medium pass
GhirA01G0009180.1 Alkaloid T3O medium borderline
GhirA01G0009200.1 Alkaloid T3O medium borderline
GhirA01G0009220.1 Alkaloid T3O medium borderline
GhirA01G0009240.1 Alkaloid T3O medium borderline
GhirA01G0009260.1 Alkaloid T3O medium borderline
GhirA01G0009310.1 Alkaloid T3O medium borderline
GhirA01G0009320.1 Alkaloid T3O medium borderline
GhirA01G0012350.1 Alkaloid T3O medium borderline
GhirA01G0021400.1 Alkaloid T3O medium borderline
GhirA01G0021420.1 Alkaloid T3O medium borderline
GhirA01G0021660.1 Alkaloid T3O medium borderline
GhirA02G0000550.1 Alkaloid T3O medium borderline
GhirA02G0009370.1 Alkaloid T3O medium borderline
GhirA02G0009400.1 Alkaloid T3O medium borderline
GhirA02G0017450.1 Alkaloid T3O medium borderline
GhirA02G0017740.1 Alkaloid T3O medium borderline
GhirA02G0017770.1 Alkaloid T3O medium borderline
GhirA02G0018890.1 Alkaloid T3O medium pass
GhirA02G0018890.2 Alkaloid T3O medium pass
GhirA02G0018890.3 Alkaloid T3O medium pass
GhirA03G0002140.1 Alkaloid T3O medium borderline
GhirA03G0002150.1 Alkaloid T3O medium borderline
GhirA03G0002160.1 Alkaloid T3O medium borderline
GhirA03G0002170.1 Alkaloid T3O medium borderline
GhirA03G0002190.1 Alkaloid T3O medium borderline