PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirD13G0001460.1 Alkaloid T3O medium pass
GhirD13G0002650.1 Alkaloid T3O medium borderline
GhirD13G0003410.1 Alkaloid T3O medium borderline
GhirD13G0004590.1 Alkaloid T3O medium pass
GhirD13G0004590.2 Alkaloid T3O medium pass
GhirD13G0009100.1 Alkaloid T3O medium pass
GhirD13G0009670.1 Alkaloid T3O medium borderline
GhirD13G0009710.1 Alkaloid T3O medium pass
GhirD13G0014260.1 Alkaloid T3O medium pass
GhirD13G0014470.1 Alkaloid T3O medium pass
GhirD13G0016140.1 Alkaloid T3O medium borderline
GhirD13G0016280.1 Alkaloid T3O medium borderline
GhirD13G0016310.1 Alkaloid T3O medium borderline
GhirD13G0018790.1 Alkaloid T3O medium pass
GhirD13G0018860.1 Alkaloid T3O medium borderline
GhirD13G0024180.1 Alkaloid T3O medium borderline
Ghirscaffold_3860002850.1 Alkaloid T3O medium pass
Ghirscaffold_5210003460.1 Alkaloid T3O medium borderline
GhirA01G0021700.1 Alkaloid TDC low borderline
GhirA05G0000900.1 Alkaloid TDC low borderline
GhirA05G0025670.1 Alkaloid TDC low borderline
GhirA07G0017260.3 Alkaloid TDC medium borderline
GhirA07G0017260.5 Alkaloid TDC medium borderline
GhirA10G0020070.1 Alkaloid TDC medium borderline
GhirD01G0023480.1 Alkaloid TDC low borderline
GhirD05G0000900.1 Alkaloid TDC low borderline
GhirD05G0026470.1 Alkaloid TDC low borderline
GhirD10G0021830.1 Alkaloid TDC medium borderline
GhirA01G0000770.1 Alkaloid TRI/TRII low borderline
GhirA01G0015720.1 Alkaloid TRI/TRII medium pass
GhirA01G0022270.1 Alkaloid TRI/TRII medium pass
GhirA01G0022280.1 Alkaloid TRI/TRII medium pass
GhirA01G0022290.1 Alkaloid TRI/TRII medium pass
GhirA01G0022300.1 Alkaloid TRI/TRII medium pass
GhirA01G0022310.1 Alkaloid TRI/TRII medium pass
GhirA01G0022320.1 Alkaloid TRI/TRII medium pass
GhirA01G0022330.1 Alkaloid TRI/TRII medium pass
GhirA01G0022340.1 Alkaloid TRI/TRII medium pass
GhirA01G0022350.1 Alkaloid TRI/TRII medium pass
GhirA01G0022360.1 Alkaloid TRI/TRII medium pass
GhirA01G0022370.1 Alkaloid TRI/TRII medium pass
GhirA01G0025280.1 Alkaloid TRI/TRII medium pass
GhirA04G0006870.1 Alkaloid TRI/TRII low borderline
GhirA04G0010630.1 Alkaloid TRI/TRII low borderline
GhirA04G0010630.2 Alkaloid TRI/TRII low borderline
GhirA05G0009780.1 Alkaloid TRI/TRII medium pass
GhirA05G0009790.1 Alkaloid TRI/TRII medium pass
GhirA05G0011480.1 Alkaloid TRI/TRII medium pass
GhirA05G0018450.1 Alkaloid TRI/TRII medium pass
GhirA05G0033660.1 Alkaloid TRI/TRII medium pass