PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirA11G0033950.1 Rosmarinic Acid C4H low borderline
GhirA11G0036230.1 Rosmarinic Acid C4H medium pass
GhirA11G0036310.1 Rosmarinic Acid C4H low borderline
GhirA12G0003200.1 Rosmarinic Acid C4H low borderline
GhirA12G0003200.2 Rosmarinic Acid C4H low borderline
GhirA12G0005930.1 Rosmarinic Acid C4H low borderline
GhirA12G0006170.1 Rosmarinic Acid C4H medium pass
GhirA12G0006830.1 Rosmarinic Acid C4H low borderline
GhirA12G0008250.1 Rosmarinic Acid C4H low borderline
GhirA12G0008260.1 Rosmarinic Acid C4H medium pass
GhirA12G0009630.1 Rosmarinic Acid C4H low borderline
GhirA12G0010950.1 Rosmarinic Acid C4H low borderline
GhirA12G0012460.1 Rosmarinic Acid C4H low borderline
GhirA12G0012620.1 Rosmarinic Acid C4H low borderline
GhirA12G0015500.1 Rosmarinic Acid C4H low borderline
GhirA12G0016210.1 Rosmarinic Acid C4H low borderline
GhirA12G0017860.1 Rosmarinic Acid C4H low borderline
GhirA12G0018200.1 Rosmarinic Acid C4H low borderline
GhirA12G0020200.1 Rosmarinic Acid C4H low borderline
GhirA12G0020620.1 Rosmarinic Acid C4H low borderline
GhirA12G0020630.1 Rosmarinic Acid C4H low borderline
GhirA12G0020640.1 Rosmarinic Acid C4H low borderline
GhirA12G0020650.1 Rosmarinic Acid C4H medium pass
GhirA12G0021180.1 Rosmarinic Acid C4H low borderline
GhirA12G0022310.1 Rosmarinic Acid C4H low borderline
GhirA12G0022660.1 Rosmarinic Acid C4H medium pass
GhirA12G0022670.1 Rosmarinic Acid C4H low borderline
GhirA12G0024370.1 Rosmarinic Acid C4H low borderline
GhirA12G0026470.1 Rosmarinic Acid C4H low borderline
GhirA12G0028260.1 Rosmarinic Acid C4H low borderline
GhirA12G0029040.1 Rosmarinic Acid C4H low borderline
GhirA12G0029050.1 Rosmarinic Acid C4H low borderline
GhirA12G0029070.1 Rosmarinic Acid C4H medium pass
GhirA12G0029080.1 Rosmarinic Acid C4H low borderline
GhirA13G0000130.1 Rosmarinic Acid C4H medium pass
GhirA13G0001310.1 Rosmarinic Acid C4H low borderline
GhirA13G0001770.1 Rosmarinic Acid C4H low borderline
GhirA13G0002380.1 Rosmarinic Acid C4H low borderline
GhirA13G0002390.1 Rosmarinic Acid C4H medium pass
GhirA13G0002410.1 Rosmarinic Acid C4H medium pass
GhirA13G0003150.1 Rosmarinic Acid C4H medium pass
GhirA13G0004050.1 Rosmarinic Acid C4H low borderline
GhirA13G0004070.1 Rosmarinic Acid C4H low borderline
GhirA13G0004090.1 Rosmarinic Acid C4H low borderline
GhirA13G0006290.1 Rosmarinic Acid C4H low borderline
GhirA13G0006330.1 Rosmarinic Acid C4H low borderline
GhirA13G0006330.2 Rosmarinic Acid C4H low borderline
GhirA13G0006330.3 Rosmarinic Acid C4H low borderline
GhirA13G0008610.1 Rosmarinic Acid C4H low borderline
GhirA13G0008680.1 Rosmarinic Acid C4H low borderline