PlantSME Plant secondary metabolism enzyme database

Hygroamblystegium varium (hygroamblystegium_varium)

Imported from atlas release summary for Hygroamblystegium varium.

1226
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 327 11 POD (177) View species results
Terpenoid pathway 295 20 BAHD (119) View species results
Alkaloid pathway 225 20 NMT (45) View species results
Flavonoid pathway 162 9 UFGT (49) View species results
Rosmarinic acid pathway 126 7 C4H (40) View species results
Steroid pathway 91 12 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 917 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 223 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
HvarHygva7710451720 Rosmarinic Acid 4CL medium pass
HvarHygva7710451730 Rosmarinic Acid 4CL medium pass
HvarHygva8260456730 Rosmarinic Acid 4CL low borderline
HvarHygva8720461400 Rosmarinic Acid 4CL low borderline
HvarHygva950469510 Rosmarinic Acid 4CL low borderline
HvarHygva10350003670 Rosmarinic Acid C4H low borderline
HvarHygva10480005050 Rosmarinic Acid C4H medium pass
HvarHygva1080007490 Rosmarinic Acid C4H low borderline
HvarHygva12460023810 Rosmarinic Acid C4H low borderline
HvarHygva12460023820 Rosmarinic Acid C4H low borderline
HvarHygva12460023870 Rosmarinic Acid C4H medium pass
HvarHygva12830028770 Rosmarinic Acid C4H low borderline
HvarHygva1355150035150 Rosmarinic Acid C4H low borderline
HvarHygva1370037080 Rosmarinic Acid C4H medium pass
HvarHygva1370037270 Rosmarinic Acid C4H low borderline
HvarHygva14070043120 Rosmarinic Acid C4H low borderline
HvarHygva14070043130 Rosmarinic Acid C4H low borderline
HvarHygva1440048790 Rosmarinic Acid C4H low borderline
HvarHygva14610052200 Rosmarinic Acid C4H low borderline
HvarHygva1470053540 Rosmarinic Acid C4H low borderline
HvarHygva1470053550 Rosmarinic Acid C4H low borderline
HvarHygva1476400055700 Rosmarinic Acid C4H medium pass
HvarHygva1477530056100 Rosmarinic Acid C4H low borderline
HvarHygva1489850058440 Rosmarinic Acid C4H low borderline
HvarHygva1490058520 Rosmarinic Acid C4H low borderline
HvarHygva1490058530 Rosmarinic Acid C4H medium pass
HvarHygva1491480058820 Rosmarinic Acid C4H low borderline
HvarHygva1530230073300 Rosmarinic Acid C4H low borderline
HvarHygva1533460075000 Rosmarinic Acid C4H medium pass
HvarHygva15420081220 Rosmarinic Acid C4H medium pass
HvarHygva1545090085440 Rosmarinic Acid C4H low borderline
HvarHygva1546280086540 Rosmarinic Acid C4H low borderline
HvarHygva1554560097840 Rosmarinic Acid C4H low borderline
HvarHygva1556810102140 Rosmarinic Acid C4H low borderline
HvarHygva1560760109370 Rosmarinic Acid C4H medium pass
HvarHygva15610110050 Rosmarinic Acid C4H medium pass
HvarHygva1563960117870 Rosmarinic Acid C4H low borderline
HvarHygva1566220124100 Rosmarinic Acid C4H low borderline
HvarHygva1567890130970 Rosmarinic Acid C4H low borderline
HvarHygva1568570133340 Rosmarinic Acid C4H low borderline
HvarHygva1568930134300 Rosmarinic Acid C4H low borderline
HvarHygva1569630136140 Rosmarinic Acid C4H medium pass
HvarHygva1570230138440 Rosmarinic Acid C4H low borderline
HvarHygva15710140820 Rosmarinic Acid C4H medium pass
HvarHygva1571020140900 Rosmarinic Acid C4H medium pass
HvarHygva1571030141010 Rosmarinic Acid C4H low borderline
HvarHygva1571850143890 Rosmarinic Acid C4H low borderline
HvarHygva1573690151280 Rosmarinic Acid C4H medium pass
HvarHygva1573790151530 Rosmarinic Acid C4H low borderline
HvarHygva1575400156240 Rosmarinic Acid C4H low borderline