PlantSME Plant secondary metabolism enzyme database

Hygroamblystegium varium (hygroamblystegium_varium)

Imported from atlas release summary for Hygroamblystegium varium.

1226
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 327 11 POD (177) View species results
Terpenoid pathway 295 20 BAHD (119) View species results
Alkaloid pathway 225 20 NMT (45) View species results
Flavonoid pathway 162 9 UFGT (49) View species results
Rosmarinic acid pathway 126 7 C4H (40) View species results
Steroid pathway 91 12 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 917 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 223 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status
HvarHygva24260335180 Phenylpropanoid C4H/CYP73A low borderline
HvarHygva27510367590 Phenylpropanoid C4H/CYP73A medium borderline
HvarHygva580432570 Phenylpropanoid C4H/CYP73A medium borderline
HvarHygva8410458600 Phenylpropanoid C4H/CYP73A low borderline
HvarHygva8410458620 Phenylpropanoid C4H/CYP73A low borderline
HvarHygva11270011670 Phenylpropanoid CAD medium pass
HvarHygva11270011680 Phenylpropanoid CAD medium pass
HvarHygva12090020020 Phenylpropanoid CAD medium borderline
HvarHygva13350033310 Phenylpropanoid CAD medium borderline
HvarHygva13440033970 Phenylpropanoid CAD low borderline
HvarHygva1501310061960 Phenylpropanoid CAD low borderline
HvarHygva1546120086410 Phenylpropanoid CAD low borderline
HvarHygva1560600109030 Phenylpropanoid CAD low borderline
HvarHygva1560670109140 Phenylpropanoid CAD low borderline
HvarHygva1563720117240 Phenylpropanoid CAD low borderline
HvarHygva1567180128830 Phenylpropanoid CAD medium pass
HvarHygva1567450130030 Phenylpropanoid CAD medium pass
HvarHygva1568330132370 Phenylpropanoid CAD low borderline
HvarHygva1569350135200 Phenylpropanoid CAD low borderline
HvarHygva1571440142010 Phenylpropanoid CAD low borderline
HvarHygva1572650147320 Phenylpropanoid CAD low borderline
HvarHygva1576170158730 Phenylpropanoid CAD medium pass
HvarHygva1582460179840 Phenylpropanoid CAD medium borderline
HvarHygva1582720180910 Phenylpropanoid CAD medium borderline
HvarHygva1584050184910 Phenylpropanoid CAD medium borderline
HvarHygva1608890212050 Phenylpropanoid CAD low borderline
HvarHygva1608900212070 Phenylpropanoid CAD low borderline
HvarHygva16860221680 Phenylpropanoid CAD medium pass
HvarHygva17070224050 Phenylpropanoid CAD low borderline
HvarHygva1743210248440 Phenylpropanoid CAD medium pass
HvarHygva1743230248530 Phenylpropanoid CAD medium pass
HvarHygva1751500253780 Phenylpropanoid CAD low borderline
HvarHygva1751510253790 Phenylpropanoid CAD low borderline
HvarHygva19330291010 Phenylpropanoid CAD low borderline
HvarHygva19330291020 Phenylpropanoid CAD low borderline
HvarHygva20340300020 Phenylpropanoid CAD medium pass
HvarHygva22510318400 Phenylpropanoid CAD medium pass
HvarHygva23880332110 Phenylpropanoid CAD low borderline
HvarHygva24280335480 Phenylpropanoid CAD medium borderline
HvarHygva26830360900 Phenylpropanoid CAD medium pass
HvarHygva29330383930 Phenylpropanoid CAD low borderline
HvarHygva29730388060 Phenylpropanoid CAD low borderline
HvarHygva3490409110 Phenylpropanoid CAD medium pass
HvarHygva440417960 Phenylpropanoid CAD medium borderline
HvarHygva7910453730 Phenylpropanoid CAD low borderline
HvarHygva8230456300 Phenylpropanoid CAD low borderline
HvarHygva12780027960 Phenylpropanoid CCR medium borderline
HvarHygva15390078540 Phenylpropanoid CCR medium borderline
HvarHygva1550060090920 Phenylpropanoid CCR low borderline
HvarHygva1568350132540 Phenylpropanoid CCR medium pass