Hygroamblystegium varium (hygroamblystegium_varium)
Imported from atlas release summary for Hygroamblystegium varium.
1226
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1226
Candidate Genes
BAHD
6.35%
POD
6.29%
4CL
5.61%
C4H
5.54%
C3'H/CYP98A
4.55%
CYP76
3.7%
NMT
3.67%
PAL
2.85%
Other Families
61.43%
More Families (96)
STR
78
2.65%
IFS
78
2.65%
IFR
74
2.51%
F3H
74
2.51%
UGT
63
2.14%
GS
61
2.07%
BR6OX2/CYP85A2
56
1.9%
T3O
55
1.87%
UFGT
53
1.8%
PYKS
52
1.77%
7DLGT
51
1.73%
DWF4/CYP90B1
51
1.73%
F3'H/CYP75B
50
1.7%
CODM/T6ODM
49
1.66%
CAD
41
1.39%
CAS
41
1.39%
TRI/TRII
40
1.36%
H6H
39
1.33%
IO
37
1.26%
SMT1/SMT2/SMT3
37
1.26%
CYP71
33
1.12%
CHS
31
1.05%
COMT
27
0.92%
CSE
23
0.78%
NCS
22
0.75%
8HGO
21
0.71%
F3'5'H/CYP75A
21
0.71%
HCT
19
0.65%
SLS
18
0.61%
G8O/G8H
17
0.58%
RAS
17
0.58%
LAMT
16
0.54%
TPS
16
0.54%
CYP90D1
15
0.51%
BBE
14
0.48%
COR
14
0.48%
7DLH
14
0.48%
CNMT
14
0.48%
SGD
14
0.48%
CPR
13
0.44%
SQS/FDFT1
13
0.44%
16OMT
12
0.41%
T16H
12
0.41%
GES
12
0.41%
LAC
12
0.41%
CCR
12
0.41%
GGPPS
12
0.41%
ANR
11
0.37%
FNS
11
0.37%
CPD/CYP90A1
11
0.37%
PMT
10
0.34%
CYP80B1
10
0.34%
TDC
10
0.34%
DWF5
10
0.34%
ROT3/CYP90C1
9
0.31%
AACT
9
0.31%
CHI
8
0.27%
TAT
8
0.27%
CYP719
7
0.24%
ANS/LDOX
7
0.24%
DFR
7
0.24%
BR6OX1/CYP85A1
7
0.24%
SMO1/SMO2
7
0.24%
FPPS
7
0.24%
HDS/IspG
7
0.24%
MPO
6
0.2%
F5H/CYP84A
6
0.2%
DET2
6
0.2%
6OMT_4OMT_SOMT
5
0.17%
TYDC_DDC
5
0.17%
CCoAOMT
5
0.17%
MVK
5
0.17%
HDR/IspH
5
0.17%
MVD
5
0.17%
ISY
4
0.14%
ADC
4
0.14%
FLS
4
0.14%
HMGR
4
0.14%
PMK
4
0.14%
MCT/IspD
4
0.14%
HPPR
3
0.1%
HYD1
3
0.1%
CYP51G1
3
0.1%
DWF1
3
0.1%
SQE
3
0.1%
HMGS
3
0.1%
DWF7
2
0.07%
CPI1
2
0.07%
FK
2
0.07%
MDS/IspF
2
0.07%
CMK/IspE
2
0.07%
DXR
2
0.07%
IDI
2
0.07%
DXS
2
0.07%
CYP80F1
1
0.03%
XMT_MXMT_DXMT
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 327 | 11 | POD (177) | View species results |
| Terpenoid pathway | 295 | 20 | BAHD (119) | View species results |
| Alkaloid pathway | 225 | 20 | NMT (45) | View species results |
| Flavonoid pathway | 162 | 9 | UFGT (49) | View species results |
| Rosmarinic acid pathway | 126 | 7 | C4H (40) | View species results |
| Steroid pathway | 91 | 12 | CAS (38) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 917 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 223 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| HvarHygva19760294990 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| HvarHygva25850351370 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| HvarHygva28310375580 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| HvarHygva28500376840 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| HvarHygva30070391730 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| HvarHygva31050402070 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| HvarHygva3260406530 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| HvarHygva410414800 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| HvarHygva4680420790 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| HvarHygva5370428230 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| HvarHygva5570430010 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| HvarHygva6150436230 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| HvarHygva7320447610 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| HvarHygva790453560 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| HvarHygva960470600 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| HvarHygva1541230080540 | Steroid | SQE | low | borderline |
| HvarHygva18840285810 | Steroid | SQE | medium | pass |
| HvarHygva7900453690 | Steroid | SQE | medium | pass |
| HvarHygva11880017870 | Steroid | SQS/FDFT1 | medium | pass |
| HvarHygva1488200058270 | Steroid | SQS/FDFT1 | medium | pass |
| HvarHygva15310073840 | Steroid | SQS/FDFT1 | high | pass |
| HvarHygva15500090810 | Steroid | SQS/FDFT1 | high | pass |
| HvarHygva1561430111610 | Steroid | SQS/FDFT1 | low | borderline |
| HvarHygva1577880164500 | Steroid | SQS/FDFT1 | high | pass |
| HvarHygva1585680190920 | Steroid | SQS/FDFT1 | medium | pass |
| HvarHygva1760570261100 | Steroid | SQS/FDFT1 | medium | pass |
| HvarHygva1760580261140 | Steroid | SQS/FDFT1 | medium | pass |
| HvarHygva19170289260 | Steroid | SQS/FDFT1 | medium | pass |
| HvarHygva20120298130 | Steroid | SQS/FDFT1 | low | borderline |
| HvarHygva23350326830 | Steroid | SQS/FDFT1 | high | pass |
| HvarHygva23990332750 | Steroid | SQS/FDFT1 | high | pass |