PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Osat09G0011010.3 Rosmarinic Acid 4CL low borderline
Osat09G0011010.4 Rosmarinic Acid 4CL low borderline
Osat09G0023260.1 Rosmarinic Acid 4CL medium pass
Osat10G0024770.1 Rosmarinic Acid 4CL medium pass
Osat11G0003460.1 Rosmarinic Acid 4CL low borderline
Osat11G0003460.2 Rosmarinic Acid 4CL low borderline
Osat11G0020670.1 Rosmarinic Acid 4CL low borderline
Osat11G0021280.1 Rosmarinic Acid 4CL low borderline
Osat11G0021280.2 Rosmarinic Acid 4CL low borderline
Osat11G0021280.3 Rosmarinic Acid 4CL low borderline
Osat11G0021280.4 Rosmarinic Acid 4CL low borderline
Osat12G0003310.1 Rosmarinic Acid 4CL low borderline
Osat12G0003310.2 Rosmarinic Acid 4CL low borderline
Osat12G0003310.3 Rosmarinic Acid 4CL low borderline
Osat12G0003310.4 Rosmarinic Acid 4CL low borderline
Osat12G0003310.5 Rosmarinic Acid 4CL low borderline
Osat12G0005040.1 Rosmarinic Acid 4CL medium pass
Osat12G0005040.2 Rosmarinic Acid 4CL medium pass
Osat01G0006470.1 Rosmarinic Acid C4H low borderline
Osat01G0007470.1 Rosmarinic Acid C4H low borderline
Osat01G0007470.2 Rosmarinic Acid C4H low borderline
Osat01G0008500.1 Rosmarinic Acid C4H low borderline
Osat01G0008510.1 Rosmarinic Acid C4H low borderline
Osat01G0008520.1 Rosmarinic Acid C4H low borderline
Osat01G0008530.1 Rosmarinic Acid C4H low borderline
Osat01G0009710.1 Rosmarinic Acid C4H medium pass
Osat01G0009720.1 Rosmarinic Acid C4H medium pass
Osat01G0009730.1 Rosmarinic Acid C4H medium pass
Osat01G0009740.1 Rosmarinic Acid C4H medium pass
Osat01G0017590.1 Rosmarinic Acid C4H low borderline
Osat01G0019260.1 Rosmarinic Acid C4H medium pass
Osat01G0019840.1 Rosmarinic Acid C4H low borderline
Osat01G0023060.1 Rosmarinic Acid C4H medium pass
Osat01G0023090.1 Rosmarinic Acid C4H low borderline
Osat01G0023090.2 Rosmarinic Acid C4H low borderline
Osat01G0023090.3 Rosmarinic Acid C4H low borderline
Osat01G0024220.1 Rosmarinic Acid C4H low borderline
Osat01G0026910.1 Rosmarinic Acid C4H low borderline
Osat01G0026920.1 Rosmarinic Acid C4H low borderline
Osat01G0026930.1 Rosmarinic Acid C4H low borderline
Osat01G0028520.1 Rosmarinic Acid C4H low borderline
Osat01G0028520.2 Rosmarinic Acid C4H low borderline
Osat01G0028530.1 Rosmarinic Acid C4H low borderline
Osat01G0028550.1 Rosmarinic Acid C4H low borderline
Osat01G0028560.1 Rosmarinic Acid C4H low borderline
Osat01G0028580.1 Rosmarinic Acid C4H low borderline
Osat01G0028590.1 Rosmarinic Acid C4H low borderline
Osat01G0028600.1 Rosmarinic Acid C4H low borderline
Osat01G0033400.1 Rosmarinic Acid C4H low borderline
Osat01G0033430.1 Rosmarinic Acid C4H low borderline