PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Osat06G0028170.1 Rosmarinic Acid C4H low borderline
Osat06G0028170.2 Rosmarinic Acid C4H low borderline
Osat06G0028170.3 Rosmarinic Acid C4H low borderline
Osat06G0028180.1 Rosmarinic Acid C4H medium pass
Osat06G0030240.1 Rosmarinic Acid C4H low borderline
Osat06G0030890.1 Rosmarinic Acid C4H low borderline
Osat07G0008650.1 Rosmarinic Acid C4H low borderline
Osat07G0008690.1 Rosmarinic Acid C4H medium pass
Osat07G0008700.1 Rosmarinic Acid C4H low borderline
Osat07G0008740.1 Rosmarinic Acid C4H low borderline
Osat07G0012790.1 Rosmarinic Acid C4H medium pass
Osat07G0012830.1 Rosmarinic Acid C4H low borderline
Osat07G0014220.1 Rosmarinic Acid C4H low borderline
Osat07G0015830.1 Rosmarinic Acid C4H low borderline
Osat07G0016640.1 Rosmarinic Acid C4H low borderline
Osat07G0020170.1 Rosmarinic Acid C4H low borderline
Osat07G0020170.3 Rosmarinic Acid C4H low borderline
Osat07G0020190.1 Rosmarinic Acid C4H low borderline
Osat07G0020200.1 Rosmarinic Acid C4H low borderline
Osat07G0020220.1 Rosmarinic Acid C4H low borderline
Osat07G0020240.1 Rosmarinic Acid C4H low borderline
Osat07G0020240.2 Rosmarinic Acid C4H low borderline
Osat07G0026330.1 Rosmarinic Acid C4H medium pass
Osat07G0028690.1 Rosmarinic Acid C4H low borderline
Osat07G0029430.1 Rosmarinic Acid C4H low borderline
Osat07G0029660.1 Rosmarinic Acid C4H low borderline
Osat07G0032050.1 Rosmarinic Acid C4H low borderline
Osat08G0000410.1 Rosmarinic Acid C4H medium pass
Osat08G0000430.1 Rosmarinic Acid C4H low borderline
Osat08G0000440.1 Rosmarinic Acid C4H low borderline
Osat08G0000450.1 Rosmarinic Acid C4H medium pass
Osat08G0000460.1 Rosmarinic Acid C4H medium pass
Osat08G0000480.1 Rosmarinic Acid C4H medium pass
Osat08G0002310.1 Rosmarinic Acid C4H low borderline
Osat08G0003690.1 Rosmarinic Acid C4H low borderline
Osat08G0003700.1 Rosmarinic Acid C4H low borderline
Osat08G0010770.1 Rosmarinic Acid C4H low borderline
Osat08G0010890.1 Rosmarinic Acid C4H low borderline
Osat08G0015160.1 Rosmarinic Acid C4H low borderline
Osat08G0015160.2 Rosmarinic Acid C4H low borderline
Osat08G0020160.1 Rosmarinic Acid C4H low borderline
Osat08G0021980.1 Rosmarinic Acid C4H medium pass
Osat08G0022570.1 Rosmarinic Acid C4H medium pass
Osat08G0025420.1 Rosmarinic Acid C4H medium pass
Osat08G0025430.1 Rosmarinic Acid C4H low borderline
Osat08G0025450.1 Rosmarinic Acid C4H low borderline
Osat08G0025450.2 Rosmarinic Acid C4H low borderline
Osat08G0025450.3 Rosmarinic Acid C4H low borderline
Osat08G0025460.1 Rosmarinic Acid C4H low borderline
Osat08G0028530.1 Rosmarinic Acid C4H low borderline