PlantSME Plant secondary metabolism enzyme database

Oryza sativa (oryza_sativa)

Imported from atlas release summary for Oryza sativa.

2290
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 638 19 BAHD (236) View species results
Alkaloid pathway 531 24 7DLGT (95) View species results
Phenylpropanoid pathway 462 11 POD (239) View species results
Flavonoid pathway 317 11 UFGT (201) View species results
Steroid pathway 180 13 SMT1/SMT2/SMT3 (78) View species results
Rosmarinic acid pathway 162 7 C4H (77) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2120 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 417 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Osat08G0028580.1 Rosmarinic Acid C4H medium pass
Osat09G0003580.1 Rosmarinic Acid C4H medium pass
Osat09G0003620.1 Rosmarinic Acid C4H medium pass
Osat09G0004280.1 Rosmarinic Acid C4H low borderline
Osat09G0011040.1 Rosmarinic Acid C4H low borderline
Osat09G0012460.1 Rosmarinic Acid C4H low borderline
Osat09G0014980.1 Rosmarinic Acid C4H medium pass
Osat09G0015000.1 Rosmarinic Acid C4H medium pass
Osat09G0015010.1 Rosmarinic Acid C4H medium pass
Osat09G0015440.1 Rosmarinic Acid C4H low borderline
Osat09G0015450.1 Rosmarinic Acid C4H medium pass
Osat09G0021080.1 Rosmarinic Acid C4H low borderline
Osat09G0021200.1 Rosmarinic Acid C4H medium pass
Osat09G0021210.1 Rosmarinic Acid C4H medium pass
Osat10G0002570.1 Rosmarinic Acid C4H low borderline
Osat10G0002870.1 Rosmarinic Acid C4H medium pass
Osat10G0004350.1 Rosmarinic Acid C4H low borderline
Osat10G0004380.1 Rosmarinic Acid C4H medium pass
Osat10G0004450.1 Rosmarinic Acid C4H medium pass
Osat10G0004500.1 Rosmarinic Acid C4H medium pass
Osat10G0004810.1 Rosmarinic Acid C4H low borderline
Osat10G0004830.1 Rosmarinic Acid C4H low borderline
Osat10G0004830.2 Rosmarinic Acid C4H low borderline
Osat10G0004850.1 Rosmarinic Acid C4H low borderline
Osat10G0006220.1 Rosmarinic Acid C4H low borderline
Osat10G0007220.1 Rosmarinic Acid C4H low borderline
Osat10G0007300.1 Rosmarinic Acid C4H low borderline
Osat10G0009140.1 Rosmarinic Acid C4H medium pass
Osat10G0010950.1 Rosmarinic Acid C4H low borderline
Osat10G0010970.1 Rosmarinic Acid C4H low borderline
Osat10G0010970.2 Rosmarinic Acid C4H low borderline
Osat10G0012470.1 Rosmarinic Acid C4H low borderline
Osat10G0015200.1 Rosmarinic Acid C4H low borderline
Osat10G0015210.1 Rosmarinic Acid C4H low borderline
Osat10G0015220.1 Rosmarinic Acid C4H medium pass
Osat10G0019920.1 Rosmarinic Acid C4H low borderline
Osat10G0019990.1 Rosmarinic Acid C4H medium pass
Osat10G0020060.1 Rosmarinic Acid C4H low borderline
Osat10G0020090.1 Rosmarinic Acid C4H low borderline
Osat10G0020120.1 Rosmarinic Acid C4H low borderline
Osat10G0020130.1 Rosmarinic Acid C4H low borderline
Osat10G0020150.1 Rosmarinic Acid C4H low borderline
Osat10G0020180.1 Rosmarinic Acid C4H low borderline
Osat10G0020190.1 Rosmarinic Acid C4H low borderline
Osat10G0020200.1 Rosmarinic Acid C4H low borderline
Osat10G0020880.1 Rosmarinic Acid C4H low borderline
Osat10G0020900.1 Rosmarinic Acid C4H low borderline
Osat10G0020900.2 Rosmarinic Acid C4H low borderline
Osat10G0020910.1 Rosmarinic Acid C4H low borderline
Osat11G0001450.1 Rosmarinic Acid C4H low borderline