PlantSME Plant secondary metabolism enzyme database

Simmondsia chinensis (simmondsia_chinensis)

Imported from atlas release summary for Simmondsia chinensis.

1765
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (195) View species results
Alkaloid pathway 472 21 NMT (101) View species results
Phenylpropanoid pathway 383 13 POD (160) View species results
Flavonoid pathway 172 10 UFGT (94) View species results
Rosmarinic acid pathway 131 7 C4H (45) View species results
Steroid pathway 131 11 SMT1/SMT2/SMT3 (49) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1322 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
SIchi01G0008280.1 Alkaloid H6H low borderline
SIchi01G0008280.2 Alkaloid H6H low borderline
SIchi01G0008280.3 Alkaloid H6H low borderline
SIchi01G0008280.4 Alkaloid H6H low borderline
SIchi01G0008280.5 Alkaloid H6H low borderline
SIchi02G0004750.1 Alkaloid H6H medium borderline
SIchi02G0004750.2 Alkaloid H6H medium borderline
SIchi02G0004750.4 Alkaloid H6H medium borderline
SIchi02G0004770.1 Alkaloid H6H medium borderline
SIchi02G0004770.2 Alkaloid H6H medium borderline
SIchi02G0004770.4 Alkaloid H6H medium borderline
SIchi03G0001770.1 Alkaloid H6H low borderline
SIchi03G0003570.1 Alkaloid H6H high pass
SIchi03G0003570.2 Alkaloid H6H medium pass
SIchi05G0000270.1 Alkaloid H6H low borderline
SIchi05G0001260.1 Alkaloid H6H low borderline
SIchi07G0004030.1 Alkaloid H6H medium pass
SIchi07G0005810.1 Alkaloid H6H low borderline
SIchi08G0003800.1 Alkaloid H6H low borderline
SIchi08G0003880.4 Alkaloid H6H medium borderline
SIchi08G0006080.1 Alkaloid H6H medium borderline
SIchi08G0006080.2 Alkaloid H6H medium borderline
SIchi08G0006110.1 Alkaloid H6H medium borderline
SIchi08G0006110.2 Alkaloid H6H low borderline
SIchi08G0006120.1 Alkaloid H6H medium borderline
SIchi08G0006280.1 Alkaloid H6H medium borderline
SIchi09G0002330.1 Alkaloid H6H medium pass
SIchi10G0002440.1 Alkaloid H6H low borderline
SIchi13G0005190.1 Alkaloid H6H medium pass
SIchi13G0005210.1 Alkaloid H6H medium borderline
SIchi13G0006470.1 Alkaloid H6H low borderline
SIchi15G0003530.1 Alkaloid H6H medium borderline
SIchi15G0003540.1 Alkaloid H6H low borderline
SIchi16G0000620.1 Alkaloid H6H medium borderline
SIchi16G0003360.2 Alkaloid H6H low borderline
SIchi17G0000710.1 Alkaloid H6H high pass
SIchi17G0005290.1 Alkaloid H6H medium borderline
SIchi17G0005290.2 Alkaloid H6H medium borderline
SIchi17G0005290.3 Alkaloid H6H medium borderline
SIchi17G0005300.1 Alkaloid H6H medium borderline
SIchi17G0005300.2 Alkaloid H6H medium borderline
SIchi17G0005300.3 Alkaloid H6H medium borderline
SIchi17G0005310.1 Alkaloid H6H medium borderline
SIchi17G0005350.1 Alkaloid H6H medium borderline
SIchi17G0005360.1 Alkaloid H6H medium borderline
SIchi17G0005370.1 Alkaloid H6H medium borderline
SIchi18G0001730.1 Alkaloid H6H medium pass
SIchi18G0001730.2 Alkaloid H6H medium pass
SIchi18G0001730.3 Alkaloid H6H medium pass
SIchi18G0004050.1 Alkaloid H6H medium borderline