PlantSME Plant secondary metabolism enzyme database

Simmondsia chinensis (simmondsia_chinensis)

Imported from atlas release summary for Simmondsia chinensis.

1765
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (195) View species results
Alkaloid pathway 472 21 NMT (101) View species results
Phenylpropanoid pathway 383 13 POD (160) View species results
Flavonoid pathway 172 10 UFGT (94) View species results
Rosmarinic acid pathway 131 7 C4H (45) View species results
Steroid pathway 131 11 SMT1/SMT2/SMT3 (49) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1322 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status Best Target
SIchi03G0003150.1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi03G0008300.1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi03G0008300.2 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi04G0003210.1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi04G0003220.1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi04G0003220.2 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi04G0003240.1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi04G0003250.1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi14G0004370.1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi14G0004370.2 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi19G0007570.1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi19G0007570.2 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi19G0007610.1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi19G0007610.2 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi19G0007620.1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO
SIchi19G0007670.1 Alkaloid LAMT medium borderline LAMT__00001__sp_B2KPR3_LAMT_CATRO