PlantSME Plant secondary metabolism enzyme database

Simmondsia chinensis (simmondsia_chinensis)

Imported from atlas release summary for Simmondsia chinensis.

1765
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (195) View species results
Alkaloid pathway 472 21 NMT (101) View species results
Phenylpropanoid pathway 383 13 POD (160) View species results
Flavonoid pathway 172 10 UFGT (94) View species results
Rosmarinic acid pathway 131 7 C4H (45) View species results
Steroid pathway 131 11 SMT1/SMT2/SMT3 (49) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1322 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
SIchi01G0002280.1 Alkaloid PYKS low borderline
SIchi02G0003660.1 Alkaloid PYKS low borderline
SIchi02G0003660.2 Alkaloid PYKS low borderline
SIchi03G0005290.1 Alkaloid PYKS high pass
SIchi03G0005300.1 Alkaloid PYKS high pass
SIchi06G0003980.1 Alkaloid PYKS low borderline
SIchi07G0003850.1 Alkaloid PYKS high pass
SIchi07G0003860.1 Alkaloid PYKS high pass
SIchi07G0003870.1 Alkaloid PYKS high pass
SIchi07G0007170.1 Alkaloid PYKS low borderline
SIchi08G0005130.1 Alkaloid PYKS low borderline
SIchi08G0005230.1 Alkaloid PYKS low borderline
SIchi08G0006890.1 Alkaloid PYKS low borderline
SIchi10G0005250.1 Alkaloid PYKS medium pass
SIchi10G0005260.1 Alkaloid PYKS high pass
SIchi11G0003350.1 Alkaloid PYKS low borderline
SIchi11G0005910.1 Alkaloid PYKS high pass
SIchi13G0004890.1 Alkaloid PYKS low borderline
SIchi13G0004900.1 Alkaloid PYKS low borderline
SIchi13G0004900.2 Alkaloid PYKS low borderline
SIchi14G0002070.1 Alkaloid PYKS low borderline
SIchi14G0003930.1 Alkaloid PYKS low borderline
SIchi14G0006600.1 Alkaloid PYKS low borderline
SIchi14G0006600.2 Alkaloid PYKS low borderline
SIchi14G0006600.3 Alkaloid PYKS low borderline
SIchi16G0005760.1 Alkaloid PYKS low borderline
SIchi16G0005770.1 Alkaloid PYKS high pass
SIchi18G0006710.1 Alkaloid PYKS high pass
SIchi19G0002810.1 Alkaloid PYKS low borderline
SIchi21G0005400.1 Alkaloid PYKS low borderline
SIchi23G0006060.1 Alkaloid PYKS low borderline
SIchi23G0006060.2 Alkaloid PYKS low borderline
SIchi23G0006950.1 Alkaloid PYKS low borderline
SIchi24G0000820.1 Alkaloid PYKS low borderline
SIchi25G0004200.1 Alkaloid PYKS low borderline
SIchi26G0001400.1 Alkaloid PYKS high pass