PlantSME Plant secondary metabolism enzyme database

Simmondsia chinensis (simmondsia_chinensis)

Imported from atlas release summary for Simmondsia chinensis.

1765
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.97% Alkaloid pathway 26.74% Phenylpropanoid pathway 21.7% Flavonoid pathway 9.75% Rosmarinic acid pathway 7.42% Steroid pathway 7.42%
Family Distribution
BAHD 6.2% C4H 5.49% C3'H/CYP98A 4.73% NMT 4.59% 4CL 4.39% POD 4.0% CYP76 3.2% IFS 3.07%
Other Families 64.34%
More Families (95)
F3H 124 3.02% UGT 118 2.88% T3O 116 2.83% 7DLGT 105 2.56% UFGT 98 2.39% CAD 85 2.07% COMT 80 1.95% DWF4/CYP90B1 79 1.93% H6H 76 1.85% STR 75 1.83% SGD 74 1.8% SMT1/SMT2/SMT3 73 1.78% BR6OX2/CYP85A2 65 1.59% CAS 62 1.51% TRI/TRII 61 1.49% F3'H/CYP75B 60 1.46% TPS 60 1.46% CYP71 58 1.41% CODM/T6ODM 56 1.37% IFR 56 1.37% GES 55 1.34% 16OMT 41 1.0% GS 38 0.93% ANR 37 0.9% PYKS 36 0.88% T16H 35 0.85% LAC 33 0.8% CSE 31 0.76% IO 29 0.71% RAS 29 0.71% CYP90D1 29 0.71% FNS 28 0.68% CCR 27 0.66% PMT 26 0.63% HCT 25 0.61% SLS 24 0.59% 8HGO 24 0.59% F3'5'H/CYP75A 24 0.59% CPR 23 0.56% BR6OX1/CYP85A1 23 0.56% 7DLH 22 0.54% TAT 22 0.54% AACT 20 0.49% COR 19 0.46% BBE 18 0.44% CCoAOMT 17 0.41% ROT3/CYP90C1 17 0.41% G8O/G8H 16 0.39% LAMT 16 0.39% F5H/CYP84A 15 0.37% CYP51G1 15 0.37% DFR 14 0.34% CHS 13 0.32% GGPPS 12 0.29% FPPS 12 0.29% SQE 11 0.27% DXS 11 0.27% NCS 10 0.24% SQS/FDFT1 10 0.24% CPD/CYP90A1 10 0.24% CNMT 9 0.22% ISY 9 0.22% SMO1/SMO2 9 0.22% TYDC_DDC 8 0.2% ANS/LDOX 7 0.17% TDC 6 0.15% PAL 6 0.15% HPPR 6 0.15% MVK 6 0.15% IDI 6 0.15% XMT_MXMT_DXMT 5 0.12% CHI 5 0.12% DET2 5 0.12% MPO 4 0.1% MVD 4 0.1% HDS/IspG 4 0.1% MCT/IspD 4 0.1% CYP719 3 0.07% CYP80F1 3 0.07% CYP80B1 3 0.07% DWF1 3 0.07% HMGR 3 0.07% HDR/IspH 3 0.07% 6OMT_4OMT_SOMT 2 0.05% ADC 2 0.05% FK 2 0.05% HYD1 2 0.05% HMGS 2 0.05% CMK/IspE 2 0.05% DXR 2 0.05% ODC 1 0.02% DWF7 1 0.02% DWF5 1 0.02% MDS/IspF 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (195) View species results
Alkaloid pathway 472 21 NMT (101) View species results
Phenylpropanoid pathway 383 13 POD (160) View species results
Flavonoid pathway 172 10 UFGT (94) View species results
Rosmarinic acid pathway 131 7 C4H (45) View species results
Steroid pathway 131 11 SMT1/SMT2/SMT3 (49) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1322 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
SIchi05G0002630.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
SIchi05G0002670.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
SIchi05G0002830.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
SIchi21G0001500.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00001__sp_A0AA51Z3J4_TYDC2_LOPWI
SIchi21G0001510.1 Alkaloid TYDC_DDC low borderline TYDC_DDC__00001__sp_A0AA51Z3J4_TYDC2_LOPWI
SIchi21G0001550.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
SIchi21G0001690.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00001__sp_A0AA51Z3J4_TYDC2_LOPWI
SIchi21G0002190.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO