Simmondsia chinensis (simmondsia_chinensis)
Imported from atlas release summary for Simmondsia chinensis.
1765
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1765
Candidate Genes
BAHD
6.2%
C4H
5.49%
C3'H/CYP98A
4.73%
NMT
4.59%
4CL
4.39%
POD
4.0%
CYP76
3.2%
IFS
3.07%
Other Families
64.34%
More Families (95)
F3H
124
3.02%
UGT
118
2.88%
T3O
116
2.83%
7DLGT
105
2.56%
UFGT
98
2.39%
CAD
85
2.07%
COMT
80
1.95%
DWF4/CYP90B1
79
1.93%
H6H
76
1.85%
STR
75
1.83%
SGD
74
1.8%
SMT1/SMT2/SMT3
73
1.78%
BR6OX2/CYP85A2
65
1.59%
CAS
62
1.51%
TRI/TRII
61
1.49%
F3'H/CYP75B
60
1.46%
TPS
60
1.46%
CYP71
58
1.41%
CODM/T6ODM
56
1.37%
IFR
56
1.37%
GES
55
1.34%
16OMT
41
1.0%
GS
38
0.93%
ANR
37
0.9%
PYKS
36
0.88%
T16H
35
0.85%
LAC
33
0.8%
CSE
31
0.76%
IO
29
0.71%
RAS
29
0.71%
CYP90D1
29
0.71%
FNS
28
0.68%
CCR
27
0.66%
PMT
26
0.63%
HCT
25
0.61%
SLS
24
0.59%
8HGO
24
0.59%
F3'5'H/CYP75A
24
0.59%
CPR
23
0.56%
BR6OX1/CYP85A1
23
0.56%
7DLH
22
0.54%
TAT
22
0.54%
AACT
20
0.49%
COR
19
0.46%
BBE
18
0.44%
CCoAOMT
17
0.41%
ROT3/CYP90C1
17
0.41%
G8O/G8H
16
0.39%
LAMT
16
0.39%
F5H/CYP84A
15
0.37%
CYP51G1
15
0.37%
DFR
14
0.34%
CHS
13
0.32%
GGPPS
12
0.29%
FPPS
12
0.29%
SQE
11
0.27%
DXS
11
0.27%
NCS
10
0.24%
SQS/FDFT1
10
0.24%
CPD/CYP90A1
10
0.24%
CNMT
9
0.22%
ISY
9
0.22%
SMO1/SMO2
9
0.22%
TYDC_DDC
8
0.2%
ANS/LDOX
7
0.17%
TDC
6
0.15%
PAL
6
0.15%
HPPR
6
0.15%
MVK
6
0.15%
IDI
6
0.15%
XMT_MXMT_DXMT
5
0.12%
CHI
5
0.12%
DET2
5
0.12%
MPO
4
0.1%
MVD
4
0.1%
HDS/IspG
4
0.1%
MCT/IspD
4
0.1%
CYP719
3
0.07%
CYP80F1
3
0.07%
CYP80B1
3
0.07%
DWF1
3
0.07%
HMGR
3
0.07%
HDR/IspH
3
0.07%
6OMT_4OMT_SOMT
2
0.05%
ADC
2
0.05%
FK
2
0.05%
HYD1
2
0.05%
HMGS
2
0.05%
CMK/IspE
2
0.05%
DXR
2
0.05%
ODC
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
MDS/IspF
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 476 | 19 | BAHD (195) | View species results |
| Alkaloid pathway | 472 | 21 | NMT (101) | View species results |
| Phenylpropanoid pathway | 383 | 13 | POD (160) | View species results |
| Flavonoid pathway | 172 | 10 | UFGT (94) | View species results |
| Rosmarinic acid pathway | 131 | 7 | C4H (45) | View species results |
| Steroid pathway | 131 | 11 | SMT1/SMT2/SMT3 (49) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1322 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 308 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| SIchi01G0001800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi01G0003800.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi01G0005640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi01G0005640.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi01G0005640.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi02G0001060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi03G0009730.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi03G0009730.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi03G0009800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi03G0009800.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi03G0010450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi03G0011590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi03G0011590.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi03G0011590.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi03G0011590.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi06G0005590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi06G0005590.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi06G0005590.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi06G0005600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi06G0008040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi06G0010370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi06G0010370.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi07G0001300.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SIchi07G0001300.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SIchi07G0001300.3 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SIchi08G0006990.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi08G0006990.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi09G0006160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi09G0006160.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi09G0006160.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi09G0008710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi09G0008710.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi09G0008710.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi09G0008710.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi09G0008790.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi10G0007510.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi10G0007510.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi10G0007570.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi10G0008120.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi10G0008120.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi10G0008120.3 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi11G0004030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi12G0000400.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SIchi12G0006660.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi12G0007300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi12G0007300.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi12G0009060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi12G0009060.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi12G0009060.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi12G0009740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |