PlantSME Plant secondary metabolism enzyme database

Simmondsia chinensis (simmondsia_chinensis)

Imported from atlas release summary for Simmondsia chinensis.

1765
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (195) View species results
Alkaloid pathway 472 21 NMT (101) View species results
Phenylpropanoid pathway 383 13 POD (160) View species results
Flavonoid pathway 172 10 UFGT (94) View species results
Rosmarinic acid pathway 131 7 C4H (45) View species results
Steroid pathway 131 11 SMT1/SMT2/SMT3 (49) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1322 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
SIchi18G0004050.2 Alkaloid H6H medium borderline
SIchi19G0000050.2 Alkaloid H6H medium pass
SIchi19G0000050.3 Alkaloid H6H medium pass
SIchi19G0003520.1 Alkaloid H6H low borderline
SIchi19G0003540.1 Alkaloid H6H medium borderline
SIchi19G0005070.1 Alkaloid H6H medium borderline
SIchi20G0003010.1 Alkaloid H6H low borderline
SIchi20G0005810.1 Alkaloid H6H medium borderline
SIchi20G0005810.2 Alkaloid H6H medium borderline
SIchi20G0005810.3 Alkaloid H6H medium borderline
SIchi20G0006870.1 Alkaloid H6H low borderline
SIchi23G0000810.1 Alkaloid H6H medium borderline
SIchi24G0003090.1 Alkaloid H6H medium pass
SIchi24G0003090.2 Alkaloid H6H low borderline
SIchi24G0003110.1 Alkaloid H6H high pass
SIchi24G0003120.1 Alkaloid H6H high pass
SIchi25G0003830.1 Alkaloid H6H medium pass
SIchi25G0003840.1 Alkaloid H6H medium pass
SIchi25G0003880.1 Alkaloid H6H medium pass
SIchi25G0003920.1 Alkaloid H6H medium pass
SIchi25G0003930.1 Alkaloid H6H low borderline
SIchi25G0003950.1 Alkaloid H6H medium borderline
SIchi25G0003980.1 Alkaloid H6H medium borderline
SIchi26G0000350.1 Alkaloid H6H medium borderline
SIchi26G0004250.1 Alkaloid H6H low borderline
SIchi26G0004400.1 Alkaloid H6H medium borderline