Simmondsia chinensis (simmondsia_chinensis)
Imported from atlas release summary for Simmondsia chinensis.
1765
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1765
Candidate Genes
BAHD
6.2%
C4H
5.49%
C3'H/CYP98A
4.73%
NMT
4.59%
4CL
4.39%
POD
4.0%
CYP76
3.2%
IFS
3.07%
Other Families
64.34%
More Families (95)
F3H
124
3.02%
UGT
118
2.88%
T3O
116
2.83%
7DLGT
105
2.56%
UFGT
98
2.39%
CAD
85
2.07%
COMT
80
1.95%
DWF4/CYP90B1
79
1.93%
H6H
76
1.85%
STR
75
1.83%
SGD
74
1.8%
SMT1/SMT2/SMT3
73
1.78%
BR6OX2/CYP85A2
65
1.59%
CAS
62
1.51%
TRI/TRII
61
1.49%
F3'H/CYP75B
60
1.46%
TPS
60
1.46%
CYP71
58
1.41%
CODM/T6ODM
56
1.37%
IFR
56
1.37%
GES
55
1.34%
16OMT
41
1.0%
GS
38
0.93%
ANR
37
0.9%
PYKS
36
0.88%
T16H
35
0.85%
LAC
33
0.8%
CSE
31
0.76%
IO
29
0.71%
RAS
29
0.71%
CYP90D1
29
0.71%
FNS
28
0.68%
CCR
27
0.66%
PMT
26
0.63%
HCT
25
0.61%
SLS
24
0.59%
8HGO
24
0.59%
F3'5'H/CYP75A
24
0.59%
CPR
23
0.56%
BR6OX1/CYP85A1
23
0.56%
7DLH
22
0.54%
TAT
22
0.54%
AACT
20
0.49%
COR
19
0.46%
BBE
18
0.44%
CCoAOMT
17
0.41%
ROT3/CYP90C1
17
0.41%
G8O/G8H
16
0.39%
LAMT
16
0.39%
F5H/CYP84A
15
0.37%
CYP51G1
15
0.37%
DFR
14
0.34%
CHS
13
0.32%
GGPPS
12
0.29%
FPPS
12
0.29%
SQE
11
0.27%
DXS
11
0.27%
NCS
10
0.24%
SQS/FDFT1
10
0.24%
CPD/CYP90A1
10
0.24%
CNMT
9
0.22%
ISY
9
0.22%
SMO1/SMO2
9
0.22%
TYDC_DDC
8
0.2%
ANS/LDOX
7
0.17%
TDC
6
0.15%
PAL
6
0.15%
HPPR
6
0.15%
MVK
6
0.15%
IDI
6
0.15%
XMT_MXMT_DXMT
5
0.12%
CHI
5
0.12%
DET2
5
0.12%
MPO
4
0.1%
MVD
4
0.1%
HDS/IspG
4
0.1%
MCT/IspD
4
0.1%
CYP719
3
0.07%
CYP80F1
3
0.07%
CYP80B1
3
0.07%
DWF1
3
0.07%
HMGR
3
0.07%
HDR/IspH
3
0.07%
6OMT_4OMT_SOMT
2
0.05%
ADC
2
0.05%
FK
2
0.05%
HYD1
2
0.05%
HMGS
2
0.05%
CMK/IspE
2
0.05%
DXR
2
0.05%
ODC
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
MDS/IspF
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 476 | 19 | BAHD (195) | View species results |
| Alkaloid pathway | 472 | 21 | NMT (101) | View species results |
| Phenylpropanoid pathway | 383 | 13 | POD (160) | View species results |
| Flavonoid pathway | 172 | 10 | UFGT (94) | View species results |
| Rosmarinic acid pathway | 131 | 7 | C4H (45) | View species results |
| Steroid pathway | 131 | 11 | SMT1/SMT2/SMT3 (49) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1322 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 308 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| SIchi01G0002720.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| SIchi01G0006270.1 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| SIchi01G0008470.1 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| SIchi01G0008470.2 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| SIchi01G0009540.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| SIchi02G0001370.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| SIchi02G0001370.2 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| SIchi02G0001380.2 | Alkaloid | NMT | medium | borderline | NMT__00062__sp_Q9SCP7_NAMT1_ARATH |
| SIchi02G0002240.1 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| SIchi02G0002240.2 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| SIchi02G0002240.3 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| SIchi02G0002240.4 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| SIchi02G0004910.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| SIchi02G0004910.2 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| SIchi02G0004910.3 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| SIchi02G0004910.5 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| SIchi02G0004910.7 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| SIchi02G0008850.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| SIchi02G0008890.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| SIchi03G0001070.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| SIchi03G0001070.2 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| SIchi03G0001070.3 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| SIchi03G0001710.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| SIchi03G0001710.2 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| SIchi03G0001710.3 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| SIchi03G0005230.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| SIchi03G0005230.2 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| SIchi03G0005230.3 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| SIchi03G0005230.4 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| SIchi04G0003420.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| SIchi04G0003420.2 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| SIchi04G0003420.3 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| SIchi04G0003420.4 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| SIchi04G0003420.5 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| SIchi04G0003420.7 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| SIchi04G0004240.1 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| SIchi04G0004240.3 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| SIchi04G0004240.4 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| SIchi04G0004240.6 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| SIchi04G0004240.7 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| SIchi04G0004240.8 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| SIchi04G0004620.1 | Alkaloid | NMT | low | borderline | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| SIchi04G0004620.2 | Alkaloid | NMT | low | borderline | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| SIchi04G0007920.1 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| SIchi05G0000380.1 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| SIchi05G0000380.2 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| SIchi05G0000380.3 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| SIchi05G0000380.4 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| SIchi06G0000030.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| SIchi06G0000460.1 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |