PlantSME Plant secondary metabolism enzyme database

Simmondsia chinensis (simmondsia_chinensis)

Imported from atlas release summary for Simmondsia chinensis.

1765
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (195) View species results
Alkaloid pathway 472 21 NMT (101) View species results
Phenylpropanoid pathway 383 13 POD (160) View species results
Flavonoid pathway 172 10 UFGT (94) View species results
Rosmarinic acid pathway 131 7 C4H (45) View species results
Steroid pathway 131 11 SMT1/SMT2/SMT3 (49) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1322 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
SIchi18G0003700.1 Rosmarinic Acid 4CL medium pass
SIchi18G0003720.1 Rosmarinic Acid 4CL medium pass
SIchi18G0003730.1 Rosmarinic Acid 4CL medium pass
SIchi22G0005010.1 Rosmarinic Acid 4CL low borderline
SIchi22G0005010.2 Rosmarinic Acid 4CL low borderline
SIchi26G0000680.1 Rosmarinic Acid 4CL low borderline
SIchi26G0000680.2 Rosmarinic Acid 4CL low borderline
SIchi26G0000680.3 Rosmarinic Acid 4CL low borderline
SIchi26G0000680.4 Rosmarinic Acid 4CL low borderline
SIchi26G0000680.5 Rosmarinic Acid 4CL low borderline
SIchi01G0002360.1 Rosmarinic Acid C4H low borderline
SIchi01G0002630.1 Rosmarinic Acid C4H low borderline
SIchi01G0006290.1 Rosmarinic Acid C4H low borderline
SIchi01G0006290.2 Rosmarinic Acid C4H low borderline
SIchi01G0006290.3 Rosmarinic Acid C4H low borderline
SIchi01G0006290.4 Rosmarinic Acid C4H low borderline
SIchi01G0006290.5 Rosmarinic Acid C4H low borderline
SIchi01G0006310.1 Rosmarinic Acid C4H low borderline
SIchi01G0007670.1 Rosmarinic Acid C4H low borderline
SIchi01G0007670.2 Rosmarinic Acid C4H low borderline
SIchi01G0008980.1 Rosmarinic Acid C4H low borderline
SIchi01G0008990.1 Rosmarinic Acid C4H medium pass
SIchi01G0009000.1 Rosmarinic Acid C4H low borderline
SIchi01G0009650.1 Rosmarinic Acid C4H low borderline
SIchi01G0010710.1 Rosmarinic Acid C4H low borderline
SIchi02G0002010.1 Rosmarinic Acid C4H medium pass
SIchi02G0002020.1 Rosmarinic Acid C4H medium pass
SIchi02G0002420.1 Rosmarinic Acid C4H low borderline
SIchi02G0002420.2 Rosmarinic Acid C4H low borderline
SIchi02G0007100.1 Rosmarinic Acid C4H low borderline
SIchi02G0007100.2 Rosmarinic Acid C4H low borderline
SIchi02G0007600.1 Rosmarinic Acid C4H low borderline
SIchi02G0007660.1 Rosmarinic Acid C4H low borderline
SIchi02G0007670.1 Rosmarinic Acid C4H medium pass
SIchi02G0007670.2 Rosmarinic Acid C4H medium pass
SIchi02G0009400.1 Rosmarinic Acid C4H medium pass
SIchi02G0009400.2 Rosmarinic Acid C4H medium pass
SIchi02G0009410.1 Rosmarinic Acid C4H low borderline
SIchi03G0000740.1 Rosmarinic Acid C4H low borderline
SIchi03G0000740.2 Rosmarinic Acid C4H low borderline
SIchi03G0000740.3 Rosmarinic Acid C4H low borderline
SIchi03G0001780.1 Rosmarinic Acid C4H medium pass
SIchi03G0001900.1 Rosmarinic Acid C4H medium pass
SIchi03G0001900.2 Rosmarinic Acid C4H low borderline
SIchi03G0001900.3 Rosmarinic Acid C4H low borderline
SIchi03G0001900.4 Rosmarinic Acid C4H low borderline
SIchi03G0003380.1 Rosmarinic Acid C4H low borderline
SIchi03G0003390.1 Rosmarinic Acid C4H low borderline
SIchi03G0003400.1 Rosmarinic Acid C4H medium pass
SIchi03G0005510.1 Rosmarinic Acid C4H low borderline