PlantSME Plant secondary metabolism enzyme database

Trocholejeunea sandvicensis (trocholejeunea_sandvicensis)

Imported from atlas release summary for Trocholejeunea sandvicensis.

526
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 144 10 POD (73) View species results
Terpenoid pathway 118 19 BAHD (52) View species results
Alkaloid pathway 115 18 NMT (19) View species results
Rosmarinic acid pathway 59 7 C4H (31) View species results
Flavonoid pathway 52 9 IFR (17) View species results
Steroid pathway 38 12 SMT1/SMT2/SMT3 (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 686 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 146 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
TRsanscaffold_90213680 Alkaloid GS low borderline
TRsanscaffold_90213690 Alkaloid GS low borderline
TRsanscaffold_90221570 Alkaloid GS low borderline
TRsanscaffold_90221580 Alkaloid GS low borderline
TRsanscaffold_90221750 Alkaloid GS low borderline
TRsanscaffold_90223610 Alkaloid GS low borderline
TRsanscaffold_100017540 Alkaloid H6H medium pass
TRsanscaffold_100017550 Alkaloid H6H medium pass
TRsanscaffold_100020030 Alkaloid H6H low borderline
TRsanscaffold_110042840 Alkaloid H6H low borderline
TRsanscaffold_110046850 Alkaloid H6H low borderline
TRsanscaffold_20088810 Alkaloid H6H medium borderline
TRsanscaffold_30117320 Alkaloid H6H medium borderline
TRsanscaffold_60163220 Alkaloid H6H medium pass
TRsanscaffold_60180670 Alkaloid H6H low borderline
TRsanscaffold_70187410 Alkaloid H6H low borderline
TRsanscaffold_90216320 Alkaloid H6H medium borderline
TRsanscaffold_100014460 Alkaloid IO medium borderline
TRsanscaffold_100029500 Alkaloid IO low borderline
TRsanscaffold_20099910 Alkaloid IO medium borderline
TRsanscaffold_20100550 Alkaloid IO medium borderline
TRsanscaffold_20100810 Alkaloid IO medium borderline
TRsanscaffold_20103230 Alkaloid IO medium borderline
TRsanscaffold_50147240 Alkaloid IO medium borderline
TRsanscaffold_50158430 Alkaloid IO low borderline
TRsanscaffold_50160560 Alkaloid IO medium borderline
TRsanscaffold_60183390 Alkaloid IO medium borderline
TRsanscaffold_80198230 Alkaloid IO low borderline
TRsanscaffold_80206890 Alkaloid IO medium borderline
TRsanscaffold_90215480 Alkaloid IO medium borderline
TRsanscaffold_90216860 Alkaloid IO medium borderline
TRsanscaffold_30107790 Alkaloid ISY medium pass
TRsanscaffold_30110610 Alkaloid ISY medium pass
TRsanscaffold_30110630 Alkaloid ISY medium pass
TRsanscaffold_70193020 Alkaloid ISY medium pass
TRsanscaffold_10002180 Alkaloid LAMT medium borderline
TRsanscaffold_10010490 Alkaloid LAMT medium pass
TRsanscaffold_10010520 Alkaloid LAMT medium pass
TRsanscaffold_20064430 Alkaloid LAMT medium borderline
TRsanscaffold_20064440 Alkaloid LAMT medium borderline
TRsanscaffold_20067020 Alkaloid LAMT medium pass
TRsanscaffold_20075860 Alkaloid LAMT medium pass
TRsanscaffold_20086450 Alkaloid LAMT medium borderline
TRsanscaffold_20103330 Alkaloid LAMT medium pass
TRsanscaffold_30105970 Alkaloid LAMT medium borderline
TRsanscaffold_50146820 Alkaloid LAMT medium borderline
TRsanscaffold_50146840 Alkaloid LAMT low borderline
TRsanscaffold_50157440 Alkaloid LAMT low borderline
TRsanscaffold_50159060 Alkaloid LAMT medium pass
TRsanscaffold_60180130 Alkaloid LAMT low borderline