PlantSME Plant secondary metabolism enzyme database

Trocholejeunea sandvicensis (trocholejeunea_sandvicensis)

Imported from atlas release summary for Trocholejeunea sandvicensis.

526
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 144 10 POD (73) View species results
Terpenoid pathway 118 19 BAHD (52) View species results
Alkaloid pathway 115 18 NMT (19) View species results
Rosmarinic acid pathway 59 7 C4H (31) View species results
Flavonoid pathway 52 9 IFR (17) View species results
Steroid pathway 38 12 SMT1/SMT2/SMT3 (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 686 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 146 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
TRsanscaffold_60182070 Terpenoid CYP76 low borderline
TRsanscaffold_60183390 Terpenoid CYP76 medium borderline
TRsanscaffold_60184280 Terpenoid CYP76 medium borderline
TRsanscaffold_60185130 Terpenoid CYP76 medium pass
TRsanscaffold_60185180 Terpenoid CYP76 medium borderline
TRsanscaffold_60186170 Terpenoid CYP76 medium pass
TRsanscaffold_70187540 Terpenoid CYP76 low borderline
TRsanscaffold_70197550 Terpenoid CYP76 medium pass
TRsanscaffold_80198230 Terpenoid CYP76 low borderline
TRsanscaffold_80203270 Terpenoid CYP76 medium borderline
TRsanscaffold_80205660 Terpenoid CYP76 low borderline
TRsanscaffold_80206890 Terpenoid CYP76 medium borderline
TRsanscaffold_90215480 Terpenoid CYP76 medium pass
TRsanscaffold_90216840 Terpenoid CYP76 medium borderline
TRsanscaffold_90216860 Terpenoid CYP76 medium borderline
TRsanscaffold_20066770 Terpenoid DXR high pass
TRsanscaffold_10011150 Terpenoid DXS medium pass
TRsanscaffold_40126280 Terpenoid DXS low borderline
TRsanscaffold_90221110 Terpenoid DXS low borderline
TRsanscaffold_90222430 Terpenoid DXS medium pass
TRsanscaffold_90222460 Terpenoid DXS medium pass
TRsanscaffold_90222470 Terpenoid DXS medium pass
TRsanscaffold_90222510 Terpenoid DXS low borderline
TRsanscaffold_40131780 Terpenoid FPPS low borderline
TRsanscaffold_40131800 Terpenoid FPPS low borderline
TRsanscaffold_50154420 Terpenoid FPPS medium pass
TRsanscaffold_70188040 Terpenoid FPPS medium pass
TRsanscaffold_110044990 Terpenoid GGPPS medium borderline
TRsanscaffold_110045050 Terpenoid GGPPS medium borderline
TRsanscaffold_60170520 Terpenoid GGPPS medium borderline
TRsanscaffold_90219590 Terpenoid GGPPS medium borderline
TRsanscaffold_90220210 Terpenoid GGPPS medium borderline
TRsanscaffold_90224100 Terpenoid GGPPS medium borderline
TRsanscaffold_100026550 Terpenoid HDR/IspH high pass
TRsanscaffold_80210010 Terpenoid HDR/IspH high pass
TRsanscaffold_100026560 Terpenoid HDS/IspG high pass
TRsanscaffold_160059000 Terpenoid HMGR medium pass
TRsanscaffold_80203630 Terpenoid HMGS high pass
TRsanscaffold_170060500 Terpenoid IDI low borderline
TRsanscaffold_40143110 Terpenoid IDI medium pass
TRsanscaffold_100038800 Terpenoid MCT/IspD high pass
TRsanscaffold_20085390 Terpenoid MCT/IspD low borderline
TRsanscaffold_90225320 Terpenoid MCT/IspD low borderline
TRsanscaffold_60169410 Terpenoid MDS/IspF high pass
TRsanscaffold_100031380 Terpenoid MVD low borderline
TRsanscaffold_10011140 Terpenoid MVD medium pass
TRsanscaffold_70195450 Terpenoid MVD medium pass
TRsanscaffold_100021560 Terpenoid MVK low borderline
TRsanscaffold_40120200 Terpenoid MVK low borderline
TRsanscaffold_40145380 Terpenoid MVK medium pass