PlantSME Plant secondary metabolism enzyme database

Alnus glutinosa (alnus_glutinosa)

Imported from atlas release summary for Alnus glutinosa.

1832
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.98% Alkaloid pathway 21.34% Phenylpropanoid pathway 19.65% Flavonoid pathway 14.08% Rosmarinic acid pathway 8.73% Steroid pathway 7.21%
Family Distribution
C4H 6.28% C3'H/CYP98A 5.84% UGT 5.35% BAHD 5.06% 7DLGT 4.6% UFGT 4.37% POD 3.91% CYP76 3.91%
Other Families 60.68%
More Families (97)
IFS 174 3.86% T3O 161 3.57% 4CL 126 2.8% DWF4/CYP90B1 112 2.49% F3'H/CYP75B 106 2.35% BR6OX2/CYP85A2 88 1.95% F3H 87 1.93% NMT 81 1.8% CAS 80 1.78% CAD 74 1.64% LAC 69 1.53% CYP71 68 1.51% CODM/T6ODM 66 1.47% SMT1/SMT2/SMT3 63 1.4% STR 60 1.33% T16H 54 1.2% TPS 51 1.13% TRI/TRII 50 1.11% CYP90D1 47 1.04% HCT 45 1.0% GES 44 0.98% G8O/G8H 41 0.91% F5H/CYP84A 40 0.89% IO 39 0.87% IFR 39 0.87% GS 38 0.84% TAT 38 0.84% H6H 34 0.75% FNS 32 0.71% PAL 30 0.67% COMT 30 0.67% CSE 30 0.67% PMT 29 0.64% RAS 29 0.64% PYKS 26 0.58% 7DLH 25 0.56% F3'5'H/CYP75A 24 0.53% NCS 23 0.51% SGD 21 0.47% COR 21 0.47% BBE 20 0.44% ANR 19 0.42% CCR 19 0.42% CPD/CYP90A1 19 0.42% BR6OX1/CYP85A1 19 0.42% 8HGO 18 0.4% SLS 17 0.38% ANS/LDOX 17 0.38% DFR 16 0.36% 16OMT 15 0.33% TYDC_DDC 15 0.33% CYP51G1 15 0.33% ROT3/CYP90C1 14 0.31% CNMT 11 0.24% LAMT 11 0.24% MVD 11 0.24% CPR 10 0.22% GGPPS 10 0.22% MPO 9 0.2% CCoAOMT 9 0.2% SQS/FDFT1 9 0.2% CYP80B1 8 0.18% AACT 8 0.18% HDS/IspG 8 0.18% ISY 7 0.16% HPPR 7 0.16% DXS 7 0.16% FPPS 7 0.16% CHS 6 0.13% MVK 6 0.13% CHI 5 0.11% DET2 5 0.11% PMK 5 0.11% XMT_MXMT_DXMT 4 0.09% CYP719 4 0.09% HMGR 4 0.09% ADC 3 0.07% TDC 3 0.07% 6OMT_4OMT_SOMT 3 0.07% CPI1 3 0.07% DWF7 3 0.07% SQE 3 0.07% DXR 3 0.07% HMGS 3 0.07% SMO1/SMO2 2 0.04% HYD1 2 0.04% DWF1 2 0.04% FK 2 0.04% DWF5 2 0.04% CMK/IspE 2 0.04% MCT/IspD 2 0.04% CYP80F1 1 0.02% ODC 1 0.02% FLS 1 0.02% IDI 1 0.02% HDR/IspH 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 531 19 UGT (203) View species results
Alkaloid pathway 391 27 7DLGT (104) View species results
Phenylpropanoid pathway 360 13 POD (152) View species results
Flavonoid pathway 258 11 UFGT (185) View species results
Rosmarinic acid pathway 160 7 C4H (72) View species results
Steroid pathway 132 13 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1798 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 302 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 16OMT
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Gene Pathway Family Confidence Status
Agluscaffold11125_cov980020380 Alkaloid 16OMT medium borderline
Agluscaffold16986_cov900089830 Alkaloid 16OMT low borderline
Agluscaffold1703_cov1070090340 Alkaloid 16OMT medium borderline
Agluscaffold18205_cov1080100440 Alkaloid 16OMT medium borderline
Agluscaffold18205_cov1080100450 Alkaloid 16OMT medium borderline
Agluscaffold19437_cov970112270 Alkaloid 16OMT medium borderline
Agluscaffold2158_cov1080130440 Alkaloid 16OMT medium borderline
Agluscaffold24626_cov920150490 Alkaloid 16OMT medium borderline
Agluscaffold30045_cov1060180840 Alkaloid 16OMT medium borderline
Agluscaffold4025_cov1070231770 Alkaloid 16OMT medium borderline
Agluscaffold41830_cov950240500 Alkaloid 16OMT medium borderline
Agluscaffold427260_cov1060279520 Alkaloid 16OMT medium borderline
Agluscaffold6377_cov1060356460 Alkaloid 16OMT medium borderline
Agluscaffold67654_cov980366440 Alkaloid 16OMT medium borderline
Agluscaffold67654_cov980366460 Alkaloid 16OMT medium borderline