Alnus glutinosa (alnus_glutinosa)
Imported from atlas release summary for Alnus glutinosa.
1832
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1832
Candidate Genes
C4H
6.28%
C3'H/CYP98A
5.84%
UGT
5.35%
BAHD
5.06%
7DLGT
4.6%
UFGT
4.37%
POD
3.91%
CYP76
3.91%
Other Families
60.68%
More Families (97)
IFS
174
3.86%
T3O
161
3.57%
4CL
126
2.8%
DWF4/CYP90B1
112
2.49%
F3'H/CYP75B
106
2.35%
BR6OX2/CYP85A2
88
1.95%
F3H
87
1.93%
NMT
81
1.8%
CAS
80
1.78%
CAD
74
1.64%
LAC
69
1.53%
CYP71
68
1.51%
CODM/T6ODM
66
1.47%
SMT1/SMT2/SMT3
63
1.4%
STR
60
1.33%
T16H
54
1.2%
TPS
51
1.13%
TRI/TRII
50
1.11%
CYP90D1
47
1.04%
HCT
45
1.0%
GES
44
0.98%
G8O/G8H
41
0.91%
F5H/CYP84A
40
0.89%
IO
39
0.87%
IFR
39
0.87%
GS
38
0.84%
TAT
38
0.84%
H6H
34
0.75%
FNS
32
0.71%
PAL
30
0.67%
COMT
30
0.67%
CSE
30
0.67%
PMT
29
0.64%
RAS
29
0.64%
PYKS
26
0.58%
7DLH
25
0.56%
F3'5'H/CYP75A
24
0.53%
NCS
23
0.51%
SGD
21
0.47%
COR
21
0.47%
BBE
20
0.44%
ANR
19
0.42%
CCR
19
0.42%
CPD/CYP90A1
19
0.42%
BR6OX1/CYP85A1
19
0.42%
8HGO
18
0.4%
SLS
17
0.38%
ANS/LDOX
17
0.38%
DFR
16
0.36%
16OMT
15
0.33%
TYDC_DDC
15
0.33%
CYP51G1
15
0.33%
ROT3/CYP90C1
14
0.31%
CNMT
11
0.24%
LAMT
11
0.24%
MVD
11
0.24%
CPR
10
0.22%
GGPPS
10
0.22%
MPO
9
0.2%
CCoAOMT
9
0.2%
SQS/FDFT1
9
0.2%
CYP80B1
8
0.18%
AACT
8
0.18%
HDS/IspG
8
0.18%
ISY
7
0.16%
HPPR
7
0.16%
DXS
7
0.16%
FPPS
7
0.16%
CHS
6
0.13%
MVK
6
0.13%
CHI
5
0.11%
DET2
5
0.11%
PMK
5
0.11%
XMT_MXMT_DXMT
4
0.09%
CYP719
4
0.09%
HMGR
4
0.09%
ADC
3
0.07%
TDC
3
0.07%
6OMT_4OMT_SOMT
3
0.07%
CPI1
3
0.07%
DWF7
3
0.07%
SQE
3
0.07%
DXR
3
0.07%
HMGS
3
0.07%
SMO1/SMO2
2
0.04%
HYD1
2
0.04%
DWF1
2
0.04%
FK
2
0.04%
DWF5
2
0.04%
CMK/IspE
2
0.04%
MCT/IspD
2
0.04%
CYP80F1
1
0.02%
ODC
1
0.02%
FLS
1
0.02%
IDI
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 531 | 19 | UGT (203) | View species results |
| Alkaloid pathway | 391 | 27 | 7DLGT (104) | View species results |
| Phenylpropanoid pathway | 360 | 13 | POD (152) | View species results |
| Flavonoid pathway | 258 | 11 | UFGT (185) | View species results |
| Rosmarinic acid pathway | 160 | 7 | C4H (72) | View species results |
| Steroid pathway | 132 | 13 | CAS (63) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1798 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 302 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Agluscaffold149404_cov950069110 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00003__sp_P17770_TDC_CATRO |
| Agluscaffold34778_cov1090206740 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Agluscaffold8106_cov880397280 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Agluscaffold8106_cov880397290 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Agluscaffold8106_cov880397300 | Alkaloid | TYDC_DDC | medium | pass | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Agluscaffold8106_cov880397310 | Alkaloid | TYDC_DDC | medium | pass | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Agluscaffold8106_cov880397320 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Agluscaffold8106_cov880397330 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Agluscaffold8106_cov880397340 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Agluscaffold8106_cov880397350 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Agluscaffold8106_cov880397480 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Agluscaffold8106_cov880397490 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Agluscaffold8106_cov880397500 | Alkaloid | TYDC_DDC | low | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Agluscaffold8106_cov880397510 | Alkaloid | TYDC_DDC | low | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Agluscaffold8507_cov890406140 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |