PlantSME Plant secondary metabolism enzyme database

Alnus glutinosa (alnus_glutinosa)

Imported from atlas release summary for Alnus glutinosa.

1832
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 531 19 UGT (203) View species results
Alkaloid pathway 391 27 7DLGT (104) View species results
Phenylpropanoid pathway 360 13 POD (152) View species results
Flavonoid pathway 258 11 UFGT (185) View species results
Rosmarinic acid pathway 160 7 C4H (72) View species results
Steroid pathway 132 13 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1798 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 302 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status Best Target
Agluscaffold11747_cov930029590 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold1234_cov1010036600 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold1270_cov1060041410 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold12964_cov1030044530 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold131060_cov1100046790 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold13817_cov1030056700 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold1384_cov1020057020 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold14479_cov1000063050 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold15408_cov920073560 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Agluscaffold163100_cov1050083630 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold22644_cov1000139500 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Agluscaffold267473_cov1030162710 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Agluscaffold2886_cov960175480 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold35120_cov1000209930 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Agluscaffold40683_cov1050233480 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Agluscaffold4218_cov940242210 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Agluscaffold424419_cov1110245220 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold424463_cov1080247760 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold5006_cov1020311060 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold6359_cov1070355960 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold71146_cov1070373360 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold73714_cov1030380690 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold89461_cov890414670 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Agluscaffold9124_cov1020417870 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold9124_cov1020417890 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold91978_cov690418820 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold9554_cov980425590 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold9554_cov980425610 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold96_cov1010427050 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Agluscaffold9896_cov1040429340 Phenylpropanoid CSE low borderline CSE__00002__sp_Q9C942_CSE_ARATH