PlantSME Plant secondary metabolism enzyme database

Alnus glutinosa (alnus_glutinosa)

Imported from atlas release summary for Alnus glutinosa.

1832
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 531 19 UGT (203) View species results
Alkaloid pathway 391 27 7DLGT (104) View species results
Phenylpropanoid pathway 360 13 POD (152) View species results
Flavonoid pathway 258 11 UFGT (185) View species results
Rosmarinic acid pathway 160 7 C4H (72) View species results
Steroid pathway 132 13 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1798 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 302 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
Agluscaffold104643_cov1040010150 Alkaloid GS high pass
Agluscaffold104643_cov1040010160 Alkaloid GS medium pass
Agluscaffold1380_cov1090056200 Alkaloid GS high pass
Agluscaffold15448_cov1030073980 Alkaloid GS low borderline
Agluscaffold15797_cov1030077420 Alkaloid GS high pass
Agluscaffold18707_cov950104460 Alkaloid GS high pass
Agluscaffold259566_cov1060159050 Alkaloid GS medium pass
Agluscaffold27428_cov1010165480 Alkaloid GS high pass
Agluscaffold27428_cov1010165540 Alkaloid GS high pass
Agluscaffold30866_cov1030185380 Alkaloid GS high pass
Agluscaffold31949_cov950192290 Alkaloid GS low borderline
Agluscaffold31949_cov950192300 Alkaloid GS low borderline
Agluscaffold31949_cov950192310 Alkaloid GS low borderline
Agluscaffold31949_cov950192320 Alkaloid GS low borderline
Agluscaffold35421_cov940212240 Alkaloid GS low borderline
Agluscaffold38527_cov1060224680 Alkaloid GS low borderline
Agluscaffold3852_cov820224890 Alkaloid GS low borderline
Agluscaffold424731_cov1030259020 Alkaloid GS high pass
Agluscaffold425634_cov1070273310 Alkaloid GS low borderline
Agluscaffold425656_cov1010274190 Alkaloid GS high pass
Agluscaffold46066_cov940294460 Alkaloid GS low borderline
Agluscaffold4786_cov880301280 Alkaloid GS low borderline
Agluscaffold5054_cov910312820 Alkaloid GS low borderline
Agluscaffold55525_cov1050327980 Alkaloid GS high pass
Agluscaffold55525_cov1050328060 Alkaloid GS low borderline
Agluscaffold5691_cov1030333940 Alkaloid GS high pass
Agluscaffold7359_cov1060380050 Alkaloid GS high pass
Agluscaffold75540_cov1040384890 Alkaloid GS medium pass
Agluscaffold75540_cov1040384910 Alkaloid GS medium pass
Agluscaffold7557_cov1030385180 Alkaloid GS low borderline
Agluscaffold7580_cov640385340 Alkaloid GS high pass
Agluscaffold77925_cov1060390760 Alkaloid GS medium pass
Agluscaffold8115_cov1010398240 Alkaloid GS medium pass
Agluscaffold8115_cov1010398250 Alkaloid GS medium pass
Agluscaffold880_cov830411320 Alkaloid GS high pass
Agluscaffold880_cov830411330 Alkaloid GS high pass
Agluscaffold9366_cov1050421820 Alkaloid GS low borderline
Agluscaffold937_cov1080422070 Alkaloid GS low borderline