Alnus glutinosa (alnus_glutinosa)
Imported from atlas release summary for Alnus glutinosa.
1832
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1832
Candidate Genes
C4H
6.28%
C3'H/CYP98A
5.84%
UGT
5.35%
BAHD
5.06%
7DLGT
4.6%
UFGT
4.37%
POD
3.91%
CYP76
3.91%
Other Families
60.68%
More Families (97)
IFS
174
3.86%
T3O
161
3.57%
4CL
126
2.8%
DWF4/CYP90B1
112
2.49%
F3'H/CYP75B
106
2.35%
BR6OX2/CYP85A2
88
1.95%
F3H
87
1.93%
NMT
81
1.8%
CAS
80
1.78%
CAD
74
1.64%
LAC
69
1.53%
CYP71
68
1.51%
CODM/T6ODM
66
1.47%
SMT1/SMT2/SMT3
63
1.4%
STR
60
1.33%
T16H
54
1.2%
TPS
51
1.13%
TRI/TRII
50
1.11%
CYP90D1
47
1.04%
HCT
45
1.0%
GES
44
0.98%
G8O/G8H
41
0.91%
F5H/CYP84A
40
0.89%
IO
39
0.87%
IFR
39
0.87%
GS
38
0.84%
TAT
38
0.84%
H6H
34
0.75%
FNS
32
0.71%
PAL
30
0.67%
COMT
30
0.67%
CSE
30
0.67%
PMT
29
0.64%
RAS
29
0.64%
PYKS
26
0.58%
7DLH
25
0.56%
F3'5'H/CYP75A
24
0.53%
NCS
23
0.51%
SGD
21
0.47%
COR
21
0.47%
BBE
20
0.44%
ANR
19
0.42%
CCR
19
0.42%
CPD/CYP90A1
19
0.42%
BR6OX1/CYP85A1
19
0.42%
8HGO
18
0.4%
SLS
17
0.38%
ANS/LDOX
17
0.38%
DFR
16
0.36%
16OMT
15
0.33%
TYDC_DDC
15
0.33%
CYP51G1
15
0.33%
ROT3/CYP90C1
14
0.31%
CNMT
11
0.24%
LAMT
11
0.24%
MVD
11
0.24%
CPR
10
0.22%
GGPPS
10
0.22%
MPO
9
0.2%
CCoAOMT
9
0.2%
SQS/FDFT1
9
0.2%
CYP80B1
8
0.18%
AACT
8
0.18%
HDS/IspG
8
0.18%
ISY
7
0.16%
HPPR
7
0.16%
DXS
7
0.16%
FPPS
7
0.16%
CHS
6
0.13%
MVK
6
0.13%
CHI
5
0.11%
DET2
5
0.11%
PMK
5
0.11%
XMT_MXMT_DXMT
4
0.09%
CYP719
4
0.09%
HMGR
4
0.09%
ADC
3
0.07%
TDC
3
0.07%
6OMT_4OMT_SOMT
3
0.07%
CPI1
3
0.07%
DWF7
3
0.07%
SQE
3
0.07%
DXR
3
0.07%
HMGS
3
0.07%
SMO1/SMO2
2
0.04%
HYD1
2
0.04%
DWF1
2
0.04%
FK
2
0.04%
DWF5
2
0.04%
CMK/IspE
2
0.04%
MCT/IspD
2
0.04%
CYP80F1
1
0.02%
ODC
1
0.02%
FLS
1
0.02%
IDI
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 531 | 19 | UGT (203) | View species results |
| Alkaloid pathway | 391 | 27 | 7DLGT (104) | View species results |
| Phenylpropanoid pathway | 360 | 13 | POD (152) | View species results |
| Flavonoid pathway | 258 | 11 | UFGT (185) | View species results |
| Rosmarinic acid pathway | 160 | 7 | C4H (72) | View species results |
| Steroid pathway | 132 | 13 | CAS (63) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1798 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 302 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Agluscaffold10410_cov1030008420 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Agluscaffold115729_cov1050025610 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Agluscaffold118397_cov910030900 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Agluscaffold1289_cov980043050 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Agluscaffold14285_cov1020061020 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Agluscaffold143105_cov930061130 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Agluscaffold14407_cov970061930 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Agluscaffold1512_cov790070920 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Agluscaffold15663_cov1020075200 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Agluscaffold1886_cov1010106000 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Agluscaffold2017_cov740120280 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Agluscaffold20410_cov1080121500 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Agluscaffold21394_cov1030128900 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Agluscaffold22600_cov610138500 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Agluscaffold2281_cov1070141110 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Agluscaffold23600_cov1050145510 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Agluscaffold23600_cov1050145530 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Agluscaffold27955_cov970168560 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Agluscaffold30540_cov790184470 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Agluscaffold3389_cov1010202650 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Agluscaffold3389_cov1010202660 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Agluscaffold37969_cov1050222670 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Agluscaffold40468_cov1010232680 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Agluscaffold41127_cov1080235040 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Agluscaffold41977_cov1060241460 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Agluscaffold4207_cov990241940 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Agluscaffold4207_cov990241960 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Agluscaffold4207_cov990241970 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Agluscaffold424551_cov1060251550 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Agluscaffold425380_cov1080267450 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Agluscaffold425529_cov1060269860 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Agluscaffold425529_cov1060269870 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Agluscaffold427253_cov1080278790 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Agluscaffold427547_cov890280560 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Agluscaffold427547_cov890280570 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Agluscaffold45133_cov1050289600 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Agluscaffold45133_cov1050289610 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Agluscaffold45133_cov1050289620 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Agluscaffold5646_cov1020332470 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Agluscaffold6679_cov1070364180 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Agluscaffold7319_cov830378990 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Agluscaffold77697_cov1080389690 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Agluscaffold7771_cov1070389960 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Agluscaffold8031_cov970395570 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Agluscaffold84381_cov860404080 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Agluscaffold84381_cov860404090 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Agluscaffold84381_cov860404120 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Agluscaffold9074_cov1040416720 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Agluscaffold9080_cov1080417280 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Agluscaffold9499_cov1090424070 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |