Alnus glutinosa (alnus_glutinosa)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 28.98% Alkaloid pathway 21.34% Phenylpropanoid pathway 19.65% Flavonoid pathway 14.08% Rosmarinic acid pathway 8.73% Steroid pathway 7.21%

Family Distribution

1832 Candidate Genes

C4H 6.28% C3'H/CYP98A 5.84% UGT 5.35% BAHD 5.06% 7DLGT 4.6% UFGT 4.37% POD 3.91% CYP76 3.91%

Other Families 60.68%

More Families (97)

IFS 174 3.86% T3O 161 3.57% 4CL 126 2.8% DWF4/CYP90B1 112 2.49% F3'H/CYP75B 106 2.35% BR6OX2/CYP85A2 88 1.95% F3H 87 1.93% NMT 81 1.8% CAS 80 1.78% CAD 74 1.64% LAC 69 1.53% CYP71 68 1.51% CODM/T6ODM 66 1.47% SMT1/SMT2/SMT3 63 1.4% STR 60 1.33% T16H 54 1.2% TPS 51 1.13% TRI/TRII 50 1.11% CYP90D1 47 1.04% HCT 45 1.0% GES 44 0.98% G8O/G8H 41 0.91% F5H/CYP84A 40 0.89% IO 39 0.87% IFR 39 0.87% GS 38 0.84% TAT 38 0.84% H6H 34 0.75% FNS 32 0.71% PAL 30 0.67% COMT 30 0.67% CSE 30 0.67% PMT 29 0.64% RAS 29 0.64% PYKS 26 0.58% 7DLH 25 0.56% F3'5'H/CYP75A 24 0.53% NCS 23 0.51% SGD 21 0.47% COR 21 0.47% BBE 20 0.44% ANR 19 0.42% CCR 19 0.42% CPD/CYP90A1 19 0.42% BR6OX1/CYP85A1 19 0.42% 8HGO 18 0.4% SLS 17 0.38% ANS/LDOX 17 0.38% DFR 16 0.36% 16OMT 15 0.33% TYDC_DDC 15 0.33% CYP51G1 15 0.33% ROT3/CYP90C1 14 0.31% CNMT 11 0.24% LAMT 11 0.24% MVD 11 0.24% CPR 10 0.22% GGPPS 10 0.22% MPO 9 0.2% CCoAOMT 9 0.2% SQS/FDFT1 9 0.2% CYP80B1 8 0.18% AACT 8 0.18% HDS/IspG 8 0.18% ISY 7 0.16% HPPR 7 0.16% DXS 7 0.16% FPPS 7 0.16% CHS 6 0.13% MVK 6 0.13% CHI 5 0.11% DET2 5 0.11% PMK 5 0.11% XMT_MXMT_DXMT 4 0.09% CYP719 4 0.09% HMGR 4 0.09% ADC 3 0.07% TDC 3 0.07% 6OMT_4OMT_SOMT 3 0.07% CPI1 3 0.07% DWF7 3 0.07% SQE 3 0.07% DXR 3 0.07% HMGS 3 0.07% SMO1/SMO2 2 0.04% HYD1 2 0.04% DWF1 2 0.04% FK 2 0.04% DWF5 2 0.04% CMK/IspE 2 0.04% MCT/IspD 2 0.04% CYP80F1 1 0.02% ODC 1 0.02% FLS 1 0.02% IDI 1 0.02% HDR/IspH 1 0.02% MDS/IspF 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	531	19	UGT (203)	View species results
Alkaloid pathway	391	27	7DLGT (104)	View species results
Phenylpropanoid pathway	360	13	POD (152)	View species results
Flavonoid pathway	258	11	UFGT (185)	View species results
Rosmarinic acid pathway	160	7	C4H (72)	View species results
Steroid pathway	132	13	CAS (63)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	1798	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	302	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: 4CL

Gene	Pathway	Family	Confidence	Status	Best Target
Agluscaffold2219_cov990135190	Rosmarinic Acid	4CL	medium	pass	4CL__00004__sp_O24146_4CL2_TOBAC
Agluscaffold3033_cov1010183290	Rosmarinic Acid	4CL	low	borderline	4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
Agluscaffold3033_cov1010183300	Rosmarinic Acid	4CL	low	borderline	4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
Agluscaffold33399_cov960200950	Rosmarinic Acid	4CL	medium	pass	4CL__00014__sp_Q84P24_4CLL6_ARATH
Agluscaffold35240_cov900210790	Rosmarinic Acid	4CL	medium	pass	4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Agluscaffold35240_cov900210800	Rosmarinic Acid	4CL	low	borderline	4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Agluscaffold41143_cov1070235390	Rosmarinic Acid	4CL	low	borderline	4CL__00006__sp_P17814_4CL1_ORYSJ
Agluscaffold424421_cov990245560	Rosmarinic Acid	4CL	low	borderline	4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
Agluscaffold424798_cov1090262240	Rosmarinic Acid	4CL	medium	pass	4CL__00001__sp_I3PB36_CNL_PETHY
Agluscaffold425597_cov1050272440	Rosmarinic Acid	4CL	low	borderline	4CL__00005__sp_P0C5B6_4CLL4_ARATH
Agluscaffold4702_cov890298770	Rosmarinic Acid	4CL	low	borderline	4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
Agluscaffold51559_cov1010315650	Rosmarinic Acid	4CL	medium	pass	4CL__00001__sp_I3PB36_CNL_PETHY
Agluscaffold51846_cov1040316770	Rosmarinic Acid	4CL	low	borderline	4CL__00014__sp_Q84P24_4CLL6_ARATH
Agluscaffold55195_cov1010327620	Rosmarinic Acid	4CL	medium	pass	4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Agluscaffold5680_cov1070333390	Rosmarinic Acid	4CL	medium	pass	4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Agluscaffold60096_cov1070344400	Rosmarinic Acid	4CL	medium	pass	4CL__00001__sp_I3PB36_CNL_PETHY
Agluscaffold62584_cov960351290	Rosmarinic Acid	4CL	medium	pass	4CL__00003__sp_M4ISH0_CCL1_HUMLU
Agluscaffold65748_cov1080360580	Rosmarinic Acid	4CL	medium	pass	4CL__00001__sp_I3PB36_CNL_PETHY
Agluscaffold66059_cov1080362070	Rosmarinic Acid	4CL	low	borderline	4CL__00014__sp_Q84P24_4CLL6_ARATH
Agluscaffold736_cov1080380420	Rosmarinic Acid	4CL	medium	pass	4CL__00012__sp_Q84P21_4CLL5_ARATH
Agluscaffold7545_cov870384750	Rosmarinic Acid	4CL	medium	pass	4CL__00014__sp_Q84P24_4CLL6_ARATH
Agluscaffold7753_cov1000389110	Rosmarinic Acid	4CL	low	borderline	4CL__00005__sp_P0C5B6_4CLL4_ARATH
Agluscaffold840_cov900403740	Rosmarinic Acid	4CL	low	borderline	4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Agluscaffold861_cov1080407980	Rosmarinic Acid	4CL	low	borderline	4CL__00014__sp_Q84P24_4CLL6_ARATH
Agluscaffold89160_cov1020414230	Rosmarinic Acid	4CL	medium	pass	4CL__00013__sp_Q84P23_4CLL9_ARATH
Agluscaffold90455_cov960416420	Rosmarinic Acid	4CL	medium	pass	4CL__00001__sp_I3PB36_CNL_PETHY