Alnus glutinosa (alnus_glutinosa)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 28.98% Alkaloid pathway 21.34% Phenylpropanoid pathway 19.65% Flavonoid pathway 14.08% Rosmarinic acid pathway 8.73% Steroid pathway 7.21%

Family Distribution

1832 Candidate Genes

C4H 6.28% C3'H/CYP98A 5.84% UGT 5.35% BAHD 5.06% 7DLGT 4.6% UFGT 4.37% POD 3.91% CYP76 3.91%

Other Families 60.68%

More Families (97)

IFS 174 3.86% T3O 161 3.57% 4CL 126 2.8% DWF4/CYP90B1 112 2.49% F3'H/CYP75B 106 2.35% BR6OX2/CYP85A2 88 1.95% F3H 87 1.93% NMT 81 1.8% CAS 80 1.78% CAD 74 1.64% LAC 69 1.53% CYP71 68 1.51% CODM/T6ODM 66 1.47% SMT1/SMT2/SMT3 63 1.4% STR 60 1.33% T16H 54 1.2% TPS 51 1.13% TRI/TRII 50 1.11% CYP90D1 47 1.04% HCT 45 1.0% GES 44 0.98% G8O/G8H 41 0.91% F5H/CYP84A 40 0.89% IO 39 0.87% IFR 39 0.87% GS 38 0.84% TAT 38 0.84% H6H 34 0.75% FNS 32 0.71% PAL 30 0.67% COMT 30 0.67% CSE 30 0.67% PMT 29 0.64% RAS 29 0.64% PYKS 26 0.58% 7DLH 25 0.56% F3'5'H/CYP75A 24 0.53% NCS 23 0.51% SGD 21 0.47% COR 21 0.47% BBE 20 0.44% ANR 19 0.42% CCR 19 0.42% CPD/CYP90A1 19 0.42% BR6OX1/CYP85A1 19 0.42% 8HGO 18 0.4% SLS 17 0.38% ANS/LDOX 17 0.38% DFR 16 0.36% 16OMT 15 0.33% TYDC_DDC 15 0.33% CYP51G1 15 0.33% ROT3/CYP90C1 14 0.31% CNMT 11 0.24% LAMT 11 0.24% MVD 11 0.24% CPR 10 0.22% GGPPS 10 0.22% MPO 9 0.2% CCoAOMT 9 0.2% SQS/FDFT1 9 0.2% CYP80B1 8 0.18% AACT 8 0.18% HDS/IspG 8 0.18% ISY 7 0.16% HPPR 7 0.16% DXS 7 0.16% FPPS 7 0.16% CHS 6 0.13% MVK 6 0.13% CHI 5 0.11% DET2 5 0.11% PMK 5 0.11% XMT_MXMT_DXMT 4 0.09% CYP719 4 0.09% HMGR 4 0.09% ADC 3 0.07% TDC 3 0.07% 6OMT_4OMT_SOMT 3 0.07% CPI1 3 0.07% DWF7 3 0.07% SQE 3 0.07% DXR 3 0.07% HMGS 3 0.07% SMO1/SMO2 2 0.04% HYD1 2 0.04% DWF1 2 0.04% FK 2 0.04% DWF5 2 0.04% CMK/IspE 2 0.04% MCT/IspD 2 0.04% CYP80F1 1 0.02% ODC 1 0.02% FLS 1 0.02% IDI 1 0.02% HDR/IspH 1 0.02% MDS/IspF 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	531	19	UGT (203)	View species results
Alkaloid pathway	391	27	7DLGT (104)	View species results
Phenylpropanoid pathway	360	13	POD (152)	View species results
Flavonoid pathway	258	11	UFGT (185)	View species results
Rosmarinic acid pathway	160	7	C4H (72)	View species results
Steroid pathway	132	13	CAS (63)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	1798	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	302	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: CAD

Gene	Pathway	Family	Confidence	Status	Best Target
Agluscaffold4786_cov880301280	Phenylpropanoid	CAD	medium	pass	CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Agluscaffold5072_cov1050313560	Phenylpropanoid	CAD	low	borderline	CAD__00005__sp_G7IYC1_CAD2_MEDTR
Agluscaffold55525_cov1050327980	Phenylpropanoid	CAD	medium	pass	CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Agluscaffold55525_cov1050328060	Phenylpropanoid	CAD	low	borderline	CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Agluscaffold5691_cov1030333940	Phenylpropanoid	CAD	medium	pass	CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Agluscaffold5740_cov960335710	Phenylpropanoid	CAD	low	borderline	CAD__00006__sp_I1ZHA5_CAD_CHAFM
Agluscaffold5740_cov960335770	Phenylpropanoid	CAD	low	borderline	CAD__00006__sp_I1ZHA5_CAD_CHAFM
Agluscaffold62270_cov910350430	Phenylpropanoid	CAD	low	borderline	CAD__00006__sp_I1ZHA5_CAD_CHAFM
Agluscaffold6575_cov990360740	Phenylpropanoid	CAD	low	borderline	CAD__00006__sp_I1ZHA5_CAD_CHAFM
Agluscaffold6575_cov990360750	Phenylpropanoid	CAD	low	borderline	CAD__00006__sp_I1ZHA5_CAD_CHAFM
Agluscaffold67609_cov1050366430	Phenylpropanoid	CAD	low	borderline	CAD__00006__sp_I1ZHA5_CAD_CHAFM
Agluscaffold725_cov940376560	Phenylpropanoid	CAD	low	borderline	CAD__00006__sp_I1ZHA5_CAD_CHAFM
Agluscaffold7359_cov1060380050	Phenylpropanoid	CAD	medium	pass	CAD__00009__sp_P42734_CADH9_ARATH
Agluscaffold7580_cov640385340	Phenylpropanoid	CAD	medium	pass	CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Agluscaffold75864_cov960385400	Phenylpropanoid	CAD	medium	borderline	CAD__00005__sp_G7IYC1_CAD2_MEDTR
Agluscaffold76602_cov1050386600	Phenylpropanoid	CAD	medium	borderline	CAD__00005__sp_G7IYC1_CAD2_MEDTR
Agluscaffold77925_cov1060390760	Phenylpropanoid	CAD	low	borderline	CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Agluscaffold8115_cov1010398240	Phenylpropanoid	CAD	medium	pass	CAD__00001__sp_A0A072VPZ8_CAD1_MEDTR
Agluscaffold8115_cov1010398250	Phenylpropanoid	CAD	medium	pass	CAD__00001__sp_A0A072VPZ8_CAD1_MEDTR
Agluscaffold880_cov830411320	Phenylpropanoid	CAD	medium	pass	CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Agluscaffold880_cov830411330	Phenylpropanoid	CAD	medium	pass	CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Agluscaffold920_cov1060419200	Phenylpropanoid	CAD	low	borderline	CAD__00006__sp_I1ZHA5_CAD_CHAFM
Agluscaffold9366_cov1050421820	Phenylpropanoid	CAD	low	borderline	CAD__00008__sp_O49482_CADH5_ARATH
Agluscaffold937_cov1080422070	Phenylpropanoid	CAD	low	borderline	CAD__00008__sp_O49482_CADH5_ARATH