Alnus glutinosa (alnus_glutinosa)
Imported from atlas release summary for Alnus glutinosa.
1832
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1832
Candidate Genes
C4H
6.28%
C3'H/CYP98A
5.84%
UGT
5.35%
BAHD
5.06%
7DLGT
4.6%
UFGT
4.37%
POD
3.91%
CYP76
3.91%
Other Families
60.68%
More Families (97)
IFS
174
3.86%
T3O
161
3.57%
4CL
126
2.8%
DWF4/CYP90B1
112
2.49%
F3'H/CYP75B
106
2.35%
BR6OX2/CYP85A2
88
1.95%
F3H
87
1.93%
NMT
81
1.8%
CAS
80
1.78%
CAD
74
1.64%
LAC
69
1.53%
CYP71
68
1.51%
CODM/T6ODM
66
1.47%
SMT1/SMT2/SMT3
63
1.4%
STR
60
1.33%
T16H
54
1.2%
TPS
51
1.13%
TRI/TRII
50
1.11%
CYP90D1
47
1.04%
HCT
45
1.0%
GES
44
0.98%
G8O/G8H
41
0.91%
F5H/CYP84A
40
0.89%
IO
39
0.87%
IFR
39
0.87%
GS
38
0.84%
TAT
38
0.84%
H6H
34
0.75%
FNS
32
0.71%
PAL
30
0.67%
COMT
30
0.67%
CSE
30
0.67%
PMT
29
0.64%
RAS
29
0.64%
PYKS
26
0.58%
7DLH
25
0.56%
F3'5'H/CYP75A
24
0.53%
NCS
23
0.51%
SGD
21
0.47%
COR
21
0.47%
BBE
20
0.44%
ANR
19
0.42%
CCR
19
0.42%
CPD/CYP90A1
19
0.42%
BR6OX1/CYP85A1
19
0.42%
8HGO
18
0.4%
SLS
17
0.38%
ANS/LDOX
17
0.38%
DFR
16
0.36%
16OMT
15
0.33%
TYDC_DDC
15
0.33%
CYP51G1
15
0.33%
ROT3/CYP90C1
14
0.31%
CNMT
11
0.24%
LAMT
11
0.24%
MVD
11
0.24%
CPR
10
0.22%
GGPPS
10
0.22%
MPO
9
0.2%
CCoAOMT
9
0.2%
SQS/FDFT1
9
0.2%
CYP80B1
8
0.18%
AACT
8
0.18%
HDS/IspG
8
0.18%
ISY
7
0.16%
HPPR
7
0.16%
DXS
7
0.16%
FPPS
7
0.16%
CHS
6
0.13%
MVK
6
0.13%
CHI
5
0.11%
DET2
5
0.11%
PMK
5
0.11%
XMT_MXMT_DXMT
4
0.09%
CYP719
4
0.09%
HMGR
4
0.09%
ADC
3
0.07%
TDC
3
0.07%
6OMT_4OMT_SOMT
3
0.07%
CPI1
3
0.07%
DWF7
3
0.07%
SQE
3
0.07%
DXR
3
0.07%
HMGS
3
0.07%
SMO1/SMO2
2
0.04%
HYD1
2
0.04%
DWF1
2
0.04%
FK
2
0.04%
DWF5
2
0.04%
CMK/IspE
2
0.04%
MCT/IspD
2
0.04%
CYP80F1
1
0.02%
ODC
1
0.02%
FLS
1
0.02%
IDI
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 531 | 19 | UGT (203) | View species results |
| Alkaloid pathway | 391 | 27 | 7DLGT (104) | View species results |
| Phenylpropanoid pathway | 360 | 13 | POD (152) | View species results |
| Flavonoid pathway | 258 | 11 | UFGT (185) | View species results |
| Rosmarinic acid pathway | 160 | 7 | C4H (72) | View species results |
| Steroid pathway | 132 | 13 | CAS (63) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1798 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 302 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Agluscaffold10722_cov1050014100 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Agluscaffold1086_cov1000017030 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Agluscaffold1086_cov1000017070 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Agluscaffold11144_cov1030020640 | Alkaloid | NMT | medium | borderline | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| Agluscaffold11793_cov930030670 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Agluscaffold1234_cov1010036790 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Agluscaffold12519_cov850038260 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Agluscaffold12977_cov840044650 | Alkaloid | NMT | low | borderline | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Agluscaffold13340_cov1000049840 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Agluscaffold13546_cov1060052450 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Agluscaffold13783_cov1070055950 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Agluscaffold14058_cov1000059030 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Agluscaffold14063_cov870059080 | Alkaloid | NMT | low | borderline | NMT__00029__sp_Q42963_PMT1_TOBAC |
| Agluscaffold14672_cov980065180 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Agluscaffold14672_cov980065190 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Agluscaffold14899_cov990068610 | Alkaloid | NMT | medium | pass | NMT__00030__sp_Q43088_RBCMT_PEA |
| Agluscaffold159336_cov980079070 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Agluscaffold174522_cov1120093370 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Agluscaffold179917_cov770098360 | Alkaloid | NMT | medium | pass | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Agluscaffold18766_cov960105140 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Agluscaffold19198_cov1010108950 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Agluscaffold20045_cov880117730 | Alkaloid | NMT | medium | borderline | NMT__00029__sp_Q42963_PMT1_TOBAC |
| Agluscaffold20425_cov1080121760 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Agluscaffold205119_cov1080122670 | Alkaloid | NMT | low | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Agluscaffold20806_cov1030124920 | Alkaloid | NMT | low | borderline | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Agluscaffold21357_cov960128530 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Agluscaffold2158_cov1080130590 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Agluscaffold21903_cov1060133040 | Alkaloid | NMT | low | borderline | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Agluscaffold22446_cov830136880 | Alkaloid | NMT | medium | borderline | NMT__00029__sp_Q42963_PMT1_TOBAC |
| Agluscaffold22490_cov970137470 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Agluscaffold2281_cov1070140970 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Agluscaffold2281_cov1070141220 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Agluscaffold23871_cov980147230 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Agluscaffold23871_cov980147240 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Agluscaffold25169_cov1040154130 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Agluscaffold26725_cov760162620 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| Agluscaffold2886_cov960175540 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Agluscaffold29852_cov1020179670 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| Agluscaffold2986_cov1060179750 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Agluscaffold2986_cov1060179770 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Agluscaffold2986_cov1060179780 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Agluscaffold35120_cov1000210010 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Agluscaffold35120_cov1000210020 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Agluscaffold3520_cov1030210640 | Alkaloid | NMT | medium | borderline | NMT__00010__sp_A4GE70_DXMT1_COFCA |
| Agluscaffold35481_cov1060212900 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Agluscaffold3679_cov1080217690 | Alkaloid | NMT | low | borderline | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Agluscaffold37872_cov800222450 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Agluscaffold3913_cov1050227150 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Agluscaffold39924_cov820230220 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Agluscaffold424431_cov1120245930 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |