PlantSME Plant secondary metabolism enzyme database

Alnus glutinosa (alnus_glutinosa)

Imported from atlas release summary for Alnus glutinosa.

1832
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.98% Alkaloid pathway 21.34% Phenylpropanoid pathway 19.65% Flavonoid pathway 14.08% Rosmarinic acid pathway 8.73% Steroid pathway 7.21%
Family Distribution
C4H 6.28% C3'H/CYP98A 5.84% UGT 5.35% BAHD 5.06% 7DLGT 4.6% UFGT 4.37% POD 3.91% CYP76 3.91%
Other Families 60.68%
More Families (97)
IFS 174 3.86% T3O 161 3.57% 4CL 126 2.8% DWF4/CYP90B1 112 2.49% F3'H/CYP75B 106 2.35% BR6OX2/CYP85A2 88 1.95% F3H 87 1.93% NMT 81 1.8% CAS 80 1.78% CAD 74 1.64% LAC 69 1.53% CYP71 68 1.51% CODM/T6ODM 66 1.47% SMT1/SMT2/SMT3 63 1.4% STR 60 1.33% T16H 54 1.2% TPS 51 1.13% TRI/TRII 50 1.11% CYP90D1 47 1.04% HCT 45 1.0% GES 44 0.98% G8O/G8H 41 0.91% F5H/CYP84A 40 0.89% IO 39 0.87% IFR 39 0.87% GS 38 0.84% TAT 38 0.84% H6H 34 0.75% FNS 32 0.71% PAL 30 0.67% COMT 30 0.67% CSE 30 0.67% PMT 29 0.64% RAS 29 0.64% PYKS 26 0.58% 7DLH 25 0.56% F3'5'H/CYP75A 24 0.53% NCS 23 0.51% SGD 21 0.47% COR 21 0.47% BBE 20 0.44% ANR 19 0.42% CCR 19 0.42% CPD/CYP90A1 19 0.42% BR6OX1/CYP85A1 19 0.42% 8HGO 18 0.4% SLS 17 0.38% ANS/LDOX 17 0.38% DFR 16 0.36% 16OMT 15 0.33% TYDC_DDC 15 0.33% CYP51G1 15 0.33% ROT3/CYP90C1 14 0.31% CNMT 11 0.24% LAMT 11 0.24% MVD 11 0.24% CPR 10 0.22% GGPPS 10 0.22% MPO 9 0.2% CCoAOMT 9 0.2% SQS/FDFT1 9 0.2% CYP80B1 8 0.18% AACT 8 0.18% HDS/IspG 8 0.18% ISY 7 0.16% HPPR 7 0.16% DXS 7 0.16% FPPS 7 0.16% CHS 6 0.13% MVK 6 0.13% CHI 5 0.11% DET2 5 0.11% PMK 5 0.11% XMT_MXMT_DXMT 4 0.09% CYP719 4 0.09% HMGR 4 0.09% ADC 3 0.07% TDC 3 0.07% 6OMT_4OMT_SOMT 3 0.07% CPI1 3 0.07% DWF7 3 0.07% SQE 3 0.07% DXR 3 0.07% HMGS 3 0.07% SMO1/SMO2 2 0.04% HYD1 2 0.04% DWF1 2 0.04% FK 2 0.04% DWF5 2 0.04% CMK/IspE 2 0.04% MCT/IspD 2 0.04% CYP80F1 1 0.02% ODC 1 0.02% FLS 1 0.02% IDI 1 0.02% HDR/IspH 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 531 19 UGT (203) View species results
Alkaloid pathway 391 27 7DLGT (104) View species results
Phenylpropanoid pathway 360 13 POD (152) View species results
Flavonoid pathway 258 11 UFGT (185) View species results
Rosmarinic acid pathway 160 7 C4H (72) View species results
Steroid pathway 132 13 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1798 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 302 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMT1/SMT2/SMT3
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Gene Pathway Family Confidence Status Best Target
Agluscaffold50272_cov550312230 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Agluscaffold5680_cov1070333520 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00004__sp_Q4VNK0_SMTA_BRAOT
Agluscaffold5805_cov1070337900 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Agluscaffold5805_cov1070337910 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Agluscaffold585_cov910340340 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Agluscaffold59319_cov990341530 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Agluscaffold59319_cov990341550 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Agluscaffold59889_cov1040343460 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00004__sp_Q4VNK0_SMTA_BRAOT
Agluscaffold603_cov1050344740 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Agluscaffold68891_cov1010368950 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH
Agluscaffold7384_cov1020381510 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Agluscaffold8104_cov1060397090 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00001__sp_H2E7T8_SMTL1_BOTBR
Agluscaffold856_cov730407450 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH