Alnus glutinosa (alnus_glutinosa)
Imported from atlas release summary for Alnus glutinosa.
2101
Candidate Protein Records
1832
Pathway-Level Records
4504
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4504
Family-Level Calls
C4H
6.28%
C3'H/CYP98A
5.84%
UGT
5.35%
BAHD
5.06%
7DLGT
4.6%
UFGT
4.37%
POD
3.91%
CYP76
3.91%
Other Families
60.68%
More Families (97)
IFS
174
3.86%
T3O
161
3.57%
4CL
126
2.8%
DWF4/CYP90B1
112
2.49%
F3'H/CYP75B
106
2.35%
BR6OX2/CYP85A2
88
1.95%
F3H
87
1.93%
NMT
81
1.8%
CAS
80
1.78%
CAD
74
1.64%
LAC
69
1.53%
CYP71
68
1.51%
CODM/T6ODM
66
1.47%
SMT1/SMT2/SMT3
63
1.4%
STR
60
1.33%
T16H
54
1.2%
TPS
51
1.13%
TRI/TRII
50
1.11%
CYP90D1
47
1.04%
HCT
45
1.0%
GES
44
0.98%
G8O/G8H
41
0.91%
F5H/CYP84A
40
0.89%
IO
39
0.87%
IFR
39
0.87%
GS
38
0.84%
TAT
38
0.84%
H6H
34
0.75%
FNS
32
0.71%
PAL
30
0.67%
COMT
30
0.67%
CSE
30
0.67%
PMT
29
0.64%
RAS
29
0.64%
PYKS
26
0.58%
7DLH
25
0.56%
F3'5'H/CYP75A
24
0.53%
NCS
23
0.51%
SGD
21
0.47%
COR
21
0.47%
BBE
20
0.44%
ANR
19
0.42%
CCR
19
0.42%
CPD/CYP90A1
19
0.42%
BR6OX1/CYP85A1
19
0.42%
8HGO
18
0.4%
SLS
17
0.38%
ANS/LDOX
17
0.38%
DFR
16
0.36%
16OMT
15
0.33%
TYDC_DDC
15
0.33%
CYP51G1
15
0.33%
ROT3/CYP90C1
14
0.31%
CNMT
11
0.24%
LAMT
11
0.24%
MVD
11
0.24%
CPR
10
0.22%
GGPPS
10
0.22%
MPO
9
0.2%
CCoAOMT
9
0.2%
SQS/FDFT1
9
0.2%
CYP80B1
8
0.18%
AACT
8
0.18%
HDS/IspG
8
0.18%
ISY
7
0.16%
HPPR
7
0.16%
DXS
7
0.16%
FPPS
7
0.16%
CHS
6
0.13%
MVK
6
0.13%
CHI
5
0.11%
DET2
5
0.11%
PMK
5
0.11%
XMT_MXMT_DXMT
4
0.09%
CYP719
4
0.09%
HMGR
4
0.09%
ADC
3
0.07%
TDC
3
0.07%
6OMT_4OMT_SOMT
3
0.07%
CPI1
3
0.07%
DWF7
3
0.07%
SQE
3
0.07%
DXR
3
0.07%
HMGS
3
0.07%
SMO1/SMO2
2
0.04%
HYD1
2
0.04%
DWF1
2
0.04%
FK
2
0.04%
DWF5
2
0.04%
CMK/IspE
2
0.04%
MCT/IspD
2
0.04%
CYP80F1
1
0.02%
ODC
1
0.02%
FLS
1
0.02%
IDI
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 531 | 19 | UGT (203) | View species results |
| Alkaloid pathway | 391 | 27 | 7DLGT (104) | View species results |
| Phenylpropanoid pathway | 360 | 13 | POD (152) | View species results |
| Flavonoid pathway | 258 | 11 | UFGT (185) | View species results |
| Rosmarinic acid pathway | 160 | 7 | C4H (72) | View species results |
| Steroid pathway | 132 | 13 | CAS (63) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1798 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 302 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Agluscaffold427260_cov1060279460 | Alkaloid | NMT | medium | borderline |
| Agluscaffold431_cov930283200 | Alkaloid | NMT | medium | pass |
| Agluscaffold4477_cov810288020 | Alkaloid | NMT | medium | pass |
| Agluscaffold4692_cov1040298510 | Alkaloid | NMT | medium | pass |
| Agluscaffold487_cov1040305960 | Alkaloid | NMT | low | borderline |
| Agluscaffold5055_cov1010312940 | Alkaloid | NMT | medium | borderline |
| Agluscaffold5243_cov1030318180 | Alkaloid | NMT | medium | pass |
| Agluscaffold5243_cov1030318530 | Alkaloid | NMT | low | borderline |
| Agluscaffold5362_cov990323340 | Alkaloid | NMT | medium | pass |
| Agluscaffold5552_cov870328830 | Alkaloid | NMT | low | borderline |
| Agluscaffold5639_cov960332240 | Alkaloid | NMT | medium | pass |
| Agluscaffold5740_cov960335810 | Alkaloid | NMT | medium | pass |
| Agluscaffold6359_cov1070355900 | Alkaloid | NMT | low | borderline |
| Agluscaffold6377_cov1060356440 | Alkaloid | NMT | medium | borderline |
| Agluscaffold65055_cov1010359400 | Alkaloid | NMT | medium | borderline |
| Agluscaffold66964_cov1060364600 | Alkaloid | NMT | medium | pass |
| Agluscaffold67654_cov980366470 | Alkaloid | NMT | medium | pass |
| Agluscaffold68891_cov1010368950 | Alkaloid | NMT | low | borderline |
| Agluscaffold72320_cov1070375980 | Alkaloid | NMT | medium | pass |
| Agluscaffold7278_cov1020376820 | Alkaloid | NMT | medium | pass |
| Agluscaffold7286_cov1060377210 | Alkaloid | NMT | medium | pass |
| Agluscaffold7286_cov1060377250 | Alkaloid | NMT | medium | pass |
| Agluscaffold74375_cov1050382780 | Alkaloid | NMT | medium | pass |
| Agluscaffold7602_cov980385470 | Alkaloid | NMT | medium | borderline |
| Agluscaffold814_cov950399000 | Alkaloid | NMT | medium | borderline |
| Agluscaffold84605_cov1010404680 | Alkaloid | NMT | medium | pass |
| Agluscaffold9080_cov1080417190 | Alkaloid | NMT | medium | pass |
| Agluscaffold9124_cov1020417820 | Alkaloid | NMT | medium | pass |
| Agluscaffold9490_cov1000423650 | Alkaloid | NMT | medium | pass |
| Agluscaffold53731_cov1000323760 | Alkaloid | ODC | medium | pass |
| Agluscaffold121436_cov950033570 | Alkaloid | PMT | low | borderline |
| Agluscaffold12576_cov940039130 | Alkaloid | PMT | medium | pass |
| Agluscaffold12576_cov940039140 | Alkaloid | PMT | low | borderline |
| Agluscaffold12576_cov940039160 | Alkaloid | PMT | medium | pass |
| Agluscaffold13211_cov1010047550 | Alkaloid | PMT | low | borderline |
| Agluscaffold13211_cov1010047560 | Alkaloid | PMT | low | borderline |
| Agluscaffold15691_cov1040075560 | Alkaloid | PMT | low | borderline |
| Agluscaffold1583_cov1020078120 | Alkaloid | PMT | medium | pass |
| Agluscaffold17577_cov1050094670 | Alkaloid | PMT | low | borderline |
| Agluscaffold18528_cov990103190 | Alkaloid | PMT | medium | borderline |
| Agluscaffold19259_cov920109950 | Alkaloid | PMT | medium | pass |
| Agluscaffold2906_cov980176450 | Alkaloid | PMT | low | borderline |
| Agluscaffold38270_cov860223320 | Alkaloid | PMT | medium | pass |
| Agluscaffold424345_cov900243570 | Alkaloid | PMT | low | borderline |
| Agluscaffold424544_cov980251250 | Alkaloid | PMT | low | borderline |
| Agluscaffold425944_cov1100275450 | Alkaloid | PMT | medium | borderline |
| Agluscaffold425975_cov850276800 | Alkaloid | PMT | low | borderline |
| Agluscaffold427074_cov990278280 | Alkaloid | PMT | low | borderline |
| Agluscaffold4522_cov880289740 | Alkaloid | PMT | low | borderline |
| Agluscaffold4866_cov900305380 | Alkaloid | PMT | low | borderline |