PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00050902-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00051321-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00058226-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00060812-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00062112-RA Flavonoid F3H low borderline
alnus_rubra_ALNRU00064405-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00064410-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00064414-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00064415-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00064419-RA Flavonoid F3H low borderline
alnus_rubra_ALNRU00064422-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00065833-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00069907-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00070142-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00073304-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00073783-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00073789-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00076204-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00076216-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00077490-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00077495-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00077502-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00077505-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00077516-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00077522-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00077534-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00081696-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00084083-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00086140-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00087224-RA Flavonoid F3H medium pass
alnus_rubra_ALNRU00091278-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00094411-RA Flavonoid F3H medium pass
alnus_rubra_ALNRU00098159-RA Flavonoid F3H low borderline
alnus_rubra_ALNRU00100567-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00106507-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00108098-RA Flavonoid F3H medium pass
alnus_rubra_ALNRU00109734-RA Flavonoid F3H low borderline
alnus_rubra_ALNRU00109747-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00110149-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00110926-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00112205-RA Flavonoid F3H low borderline
alnus_rubra_ALNRU00119271-RA Flavonoid F3H low borderline
alnus_rubra_ALNRU00124716-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00129509-RA Flavonoid F3H low borderline
alnus_rubra_ALNRU00129711-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00136304-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00136306-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00139294-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00140850-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00028040-RA Flavonoid FLS low borderline