PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00135805-RA Flavonoid F3'H/CYP75B medium borderline
alnus_rubra_ALNRU00138160-RA Flavonoid F3'H/CYP75B medium borderline
alnus_rubra_ALNRU00138548-RA Flavonoid F3'H/CYP75B medium borderline
alnus_rubra_ALNRU00138549-RA Flavonoid F3'H/CYP75B medium borderline
alnus_rubra_ALNRU00138591-RA Flavonoid F3'H/CYP75B medium borderline
alnus_rubra_ALNRU00140193-RA Flavonoid F3'H/CYP75B medium borderline
alnus_rubra_ALNRU00140725-RA Flavonoid F3'H/CYP75B low borderline
alnus_rubra_ALNRU00140729-RA Flavonoid F3'H/CYP75B low borderline
alnus_rubra_ALNRU00141326-RA Flavonoid F3'H/CYP75B low borderline
alnus_rubra_ALNRU00000949-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00002603-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00006709-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00009734-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00011346-RA Flavonoid F3H low borderline
alnus_rubra_ALNRU00013023-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00013564-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00017763-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00017796-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00017798-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00022738-RA Flavonoid F3H medium pass
alnus_rubra_ALNRU00025381-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00025395-RA Flavonoid F3H low borderline
alnus_rubra_ALNRU00025422-RA Flavonoid F3H low borderline
alnus_rubra_ALNRU00025424-RA Flavonoid F3H low borderline
alnus_rubra_ALNRU00025941-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00027879-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00029546-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00029549-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00029563-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00029564-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00029575-RA Flavonoid F3H medium pass
alnus_rubra_ALNRU00029579-RA Flavonoid F3H low borderline
alnus_rubra_ALNRU00029587-RA Flavonoid F3H low borderline
alnus_rubra_ALNRU00030118-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00032122-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00032693-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00033578-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00036637-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00036642-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00036646-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00037056-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00037406-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00038282-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00038594-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00038861-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00041161-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00041889-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00043158-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00043874-RA Flavonoid F3H medium borderline
alnus_rubra_ALNRU00043879-RA Flavonoid F3H medium borderline