PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00092217-RA Steroid CYP90D1 low borderline
alnus_rubra_ALNRU00096955-RA Steroid CYP90D1 low borderline
alnus_rubra_ALNRU00096957-RA Steroid CYP90D1 low borderline
alnus_rubra_ALNRU00096972-RA Steroid CYP90D1 low borderline
alnus_rubra_ALNRU00106690-RA Steroid CYP90D1 low borderline
alnus_rubra_ALNRU00106780-RA Steroid CYP90D1 low borderline
alnus_rubra_ALNRU00121386-RA Steroid CYP90D1 low borderline
alnus_rubra_ALNRU00125261-RA Steroid CYP90D1 low borderline
alnus_rubra_ALNRU00130478-RA Steroid CYP90D1 medium borderline
alnus_rubra_ALNRU00135792-RA Steroid CYP90D1 medium pass
alnus_rubra_ALNRU00136845-RA Steroid CYP90D1 low borderline
alnus_rubra_ALNRU00136847-RA Steroid CYP90D1 low borderline
alnus_rubra_ALNRU00138161-RA Steroid CYP90D1 low borderline
alnus_rubra_ALNRU00030316-RA Steroid DET2 medium pass
alnus_rubra_ALNRU00079943-RA Steroid DET2 low borderline
alnus_rubra_ALNRU00010129-RA Steroid DWF1 medium pass
alnus_rubra_ALNRU00131849-RA Steroid DWF1 medium pass
alnus_rubra_ALNRU00000354-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00000859-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00001369-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00002452-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00002545-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00003330-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00003405-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00003465-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00004692-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00004694-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00006876-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00007451-RA Steroid DWF4/CYP90B1 medium borderline
alnus_rubra_ALNRU00009602-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00010585-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00012879-RA Steroid DWF4/CYP90B1 medium borderline
alnus_rubra_ALNRU00013115-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00013120-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00017879-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00017909-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00017912-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00017916-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00017917-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00017920-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00021479-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00021697-RA Steroid DWF4/CYP90B1 medium borderline
alnus_rubra_ALNRU00026175-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00026572-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00032616-RA Steroid DWF4/CYP90B1 medium borderline
alnus_rubra_ALNRU00033028-RA Steroid DWF4/CYP90B1 medium borderline
alnus_rubra_ALNRU00034206-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00034214-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00034233-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00039541-RA Steroid DWF4/CYP90B1 low borderline