PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Cretscaffold86027_cov910236970.1 Flavonoid 4CL low borderline
Cretscaffold86027_cov910236970.10 Flavonoid 4CL low borderline
Cretscaffold86027_cov910236970.2 Flavonoid 4CL low borderline
Cretscaffold86027_cov910236970.3 Flavonoid 4CL low borderline
Cretscaffold86027_cov910236970.4 Flavonoid 4CL low borderline
Cretscaffold86027_cov910236970.5 Flavonoid 4CL low borderline
Cretscaffold86027_cov910236970.6 Flavonoid 4CL low borderline
Cretscaffold86027_cov910236970.7 Flavonoid 4CL low borderline
Cretscaffold86027_cov910236970.8 Flavonoid 4CL low borderline
Cretscaffold86027_cov910236970.9 Flavonoid 4CL low borderline
Cretscaffold86035_cov920243770.1 Flavonoid 4CL low borderline
Cretscaffold86042_cov890247780.1 Flavonoid 4CL low borderline
Cretscaffold86042_cov890247780.2 Flavonoid 4CL low borderline
Cretscaffold86048_cov930255130.1 Flavonoid 4CL medium pass
Cretscaffold86048_cov930255350.1 Flavonoid 4CL medium pass
Cretscaffold86048_cov930257380.1 Flavonoid 4CL low borderline
Cretscaffold86063_cov860265860.1 Flavonoid 4CL medium pass
Cretscaffold86082_cov970273010.1 Flavonoid 4CL low borderline
Cretscaffold8841_cov910282830.1 Flavonoid 4CL low borderline
Cretscaffold1027_cov900003730.1 Flavonoid ANR medium borderline
Cretscaffold1027_cov900003730.2 Flavonoid ANR medium borderline
Cretscaffold11345_cov920006840.1 Flavonoid ANR medium borderline
Cretscaffold1382_cov810019810.1 Flavonoid ANR medium borderline
Cretscaffold146_cov780021420.1 Flavonoid ANR medium borderline
Cretscaffold73555_cov810119210.1 Flavonoid ANR medium borderline
Cretscaffold81160_cov1070122790.1 Flavonoid ANR low borderline
Cretscaffold85899_cov890144170.1 Flavonoid ANR medium borderline
Cretscaffold85918_cov900167790.1 Flavonoid ANR medium borderline
Cretscaffold85923_cov900179840.3 Flavonoid ANR medium borderline
Cretscaffold85923_cov900181100.1 Flavonoid ANR medium borderline
Cretscaffold85923_cov900181100.2 Flavonoid ANR medium borderline
Cretscaffold85923_cov900181100.3 Flavonoid ANR medium borderline
Cretscaffold85923_cov900181100.4 Flavonoid ANR medium borderline
Cretscaffold85923_cov900181290.1 Flavonoid ANR medium borderline
Cretscaffold85923_cov900181290.2 Flavonoid ANR medium borderline
Cretscaffold85938_cov950196870.1 Flavonoid ANR low borderline
Cretscaffold85995_cov800222900.1 Flavonoid ANR medium borderline
Cretscaffold86027_cov910232630.1 Flavonoid ANR low borderline
Cretscaffold86027_cov910232640.1 Flavonoid ANR medium borderline
Cretscaffold86048_cov930254580.1 Flavonoid ANR low borderline
Cretscaffold86048_cov930257210.1 Flavonoid ANR medium borderline
Cretscaffold86048_cov930258540.1 Flavonoid ANR medium pass
Cretscaffold86048_cov930258540.2 Flavonoid ANR low borderline
Cretscaffold86048_cov930258540.3 Flavonoid ANR medium pass
Cretscaffold86048_cov930258540.4 Flavonoid ANR low borderline
Cretscaffold86063_cov860265150.1 Flavonoid ANR medium borderline
Cretscaffold90_cov940285580.1 Flavonoid ANR medium borderline
Cretscaffold146_cov780021890.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold146_cov780021910.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold26063_cov960039360.1 Flavonoid ANS/LDOX medium borderline