PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Cretscaffold440_cov850088330.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold46437_cov810091590.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold50020_cov620098480.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold85912_cov810160690.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold85912_cov810160790.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold85918_cov900171500.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold85935_cov930195700.1 Flavonoid ANS/LDOX medium pass
Cretscaffold86027_cov910236920.1 Flavonoid ANS/LDOX medium borderline
Cretscaffold1027_cov900004390.1 Flavonoid C4H low borderline
Cretscaffold11345_cov920007940.1 Flavonoid C4H medium borderline
Cretscaffold2964_cov920055770.1 Flavonoid C4H low borderline
Cretscaffold2964_cov920058030.1 Flavonoid C4H medium borderline
Cretscaffold480_cov830093220.1 Flavonoid C4H medium borderline
Cretscaffold849_cov840135650.1 Flavonoid C4H medium borderline
Cretscaffold85995_cov800222460.1 Flavonoid C4H low borderline
Cretscaffold86030_cov920239650.1 Flavonoid C4H medium borderline
Cretscaffold86048_cov930259800.1 Flavonoid C4H low borderline
Cretscaffold294_cov920051550.1 Flavonoid CHI low borderline
Cretscaffold294_cov920051550.2 Flavonoid CHI low borderline
Cretscaffold294_cov920051550.3 Flavonoid CHI low borderline
Cretscaffold294_cov920051550.4 Flavonoid CHI low borderline
Cretscaffold294_cov920051550.5 Flavonoid CHI low borderline
Cretscaffold85938_cov950197520.1 Flavonoid CHI medium pass
Cretscaffold86030_cov920239720.1 Flavonoid CHI medium pass
Cretscaffold86030_cov920239720.2 Flavonoid CHI medium pass
Cretscaffold86030_cov920239720.3 Flavonoid CHI medium pass
Cretscaffold86030_cov920239720.4 Flavonoid CHI medium pass
Cretscaffold86082_cov970273200.1 Flavonoid CHI low borderline
Cretscaffold18765_cov1340030140.1 Flavonoid CHS medium pass
Cretscaffold2964_cov920053590.1 Flavonoid CHS medium pass
Cretscaffold397_cov790067930.1 Flavonoid CHS medium pass
Cretscaffold4658_cov1140091720.1 Flavonoid CHS medium pass
Cretscaffold5933_cov910112130.1 Flavonoid CHS medium pass
Cretscaffold5933_cov910112160.1 Flavonoid CHS medium pass
Cretscaffold82373_cov750124830.1 Flavonoid CHS medium pass
Cretscaffold83267_cov900126410.1 Flavonoid CHS medium pass
Cretscaffold85899_cov890145330.1 Flavonoid CHS low borderline
Cretscaffold85947_cov920201780.1 Flavonoid CHS low borderline
Cretscaffold85995_cov800222910.1 Flavonoid CHS medium pass
Cretscaffold85995_cov800222920.1 Flavonoid CHS medium pass
Cretscaffold85995_cov800222940.1 Flavonoid CHS medium pass
Cretscaffold86027_cov910231910.1 Flavonoid CHS low borderline
Cretscaffold8841_cov910277450.1 Flavonoid CHS medium pass
Cretscaffold8841_cov910277450.2 Flavonoid CHS medium pass
Cretscaffold8841_cov910277460.1 Flavonoid CHS medium pass
Cretscaffold39867_cov680068560.1 Flavonoid DFR medium borderline
Cretscaffold85923_cov900179830.1 Flavonoid DFR medium borderline
Cretscaffold85923_cov900179840.1 Flavonoid DFR medium borderline
Cretscaffold85923_cov900179840.2 Flavonoid DFR medium borderline
Cretscaffold85923_cov900179840.4 Flavonoid DFR medium borderline