PlantSME Plant secondary metabolism enzyme database

Codonopsis lanceolata (codonopsis_lanceolata)

Imported from atlas release summary for Codonopsis lanceolata.

2489
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.73% Alkaloid pathway 23.87% Phenylpropanoid pathway 17.64% Flavonoid pathway 12.17% Rosmarinic acid pathway 9.68% Steroid pathway 7.91%
Family Distribution
C4H 6.96% C3'H/CYP98A 6.22% BAHD 4.42% UGT 4.21% T3O 3.89% IFS 3.87% 4CL 3.86% CYP76 3.79%
Other Families 62.78%
More Families (97)
7DLGT 225 3.6% UFGT 215 3.44% POD 188 3.01% CAS 171 2.74% DWF4/CYP90B1 158 2.53% TPS 147 2.35% F3H 141 2.26% F3'H/CYP75B 139 2.22% CAD 136 2.18% BBE 116 1.86% GES 116 1.86% STR 103 1.65% BR6OX2/CYP85A2 101 1.62% CYP71 92 1.47% CODM/T6ODM 89 1.42% NMT 85 1.36% CYP90D1 84 1.34% SGD 80 1.28% H6H 78 1.25% GS 78 1.25% CSE 73 1.17% TAT 68 1.09% IO 67 1.07% T16H 63 1.01% G8O/G8H 51 0.82% LAC 49 0.78% SMT1/SMT2/SMT3 49 0.78% F3'5'H/CYP75A 45 0.72% CPD/CYP90A1 45 0.72% TRI/TRII 44 0.7% FNS 40 0.64% HCT 40 0.64% 7DLH 39 0.62% F5H/CYP84A 36 0.58% CYP51G1 36 0.58% IFR 34 0.54% ANR 30 0.48% DFR 29 0.46% COR 28 0.45% CCR 28 0.45% PYKS 26 0.42% SLS 25 0.4% PMT 23 0.37% NCS 23 0.37% ANS/LDOX 22 0.35% BR6OX1/CYP85A1 22 0.35% COMT 19 0.3% PAL 18 0.29% ROT3/CYP90C1 18 0.29% FPPS 18 0.29% 8HGO 17 0.27% LAMT 16 0.26% ISY 13 0.21% RAS 13 0.21% HPPR 12 0.19% GGPPS 12 0.19% CNMT 11 0.18% MPO 11 0.18% CPR 11 0.18% DET2 11 0.18% CYP80B1 10 0.16% CHS 10 0.16% SQE 9 0.14% SQS/FDFT1 8 0.13% HMGR 8 0.13% CYP719 7 0.11% AACT 7 0.11% XMT_MXMT_DXMT 6 0.1% 6OMT_4OMT_SOMT 6 0.1% 16OMT 6 0.1% FLS 6 0.1% CCoAOMT 6 0.1% DXS 6 0.1% SMO1/SMO2 4 0.06% CHI 3 0.05% MVK 3 0.05% MVD 3 0.05% MCT/IspD 3 0.05% DXR 3 0.05% HDS/IspG 3 0.05% PMK 3 0.05% TYDC_DDC 2 0.03% ADC 2 0.03% ODC 2 0.03% FK 2 0.03% DWF1 2 0.03% DWF7 2 0.03% CPI1 2 0.03% CMK/IspE 2 0.03% HMGS 2 0.03% GPPS 2 0.03% TDC 1 0.02% DWF5 1 0.02% HYD1 1 0.02% HDR/IspH 1 0.02% MDS/IspF 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 715 20 UGT (226) View species results
Alkaloid pathway 594 24 7DLGT (98) View species results
Phenylpropanoid pathway 439 12 POD (165) View species results
Flavonoid pathway 303 11 UFGT (197) View species results
Rosmarinic acid pathway 241 7 C4H (105) View species results
Steroid pathway 197 15 CAS (137) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2584 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 329 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPR
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Gene Pathway Family Confidence Status Best Target
codonopsis_lanceolata_Cl_C17860_unscaffolded_00020T Rosmarinic Acid CPR low borderline CPR__00007__sp_Q96327_EBP1_ARATH
codonopsis_lanceolata_Cl_C18768_unscaffolded_00010T Rosmarinic Acid CPR medium pass CPR__00001__sp_A0A2U1LIM9_NCPR1_ARTAN
codonopsis_lanceolata_Cl_chr02_26980T Rosmarinic Acid CPR medium pass CPR__00008__sp_Q9SB48_NCPR1_ARATH
codonopsis_lanceolata_Cl_chr02_59390T Rosmarinic Acid CPR low borderline CPR__00004__sp_Q0J705_NCPR2_ORYSJ
codonopsis_lanceolata_Cl_chr03_14500T Rosmarinic Acid CPR low borderline CPR__00001__sp_A0A2U1LIM9_NCPR1_ARTAN
codonopsis_lanceolata_Cl_chr03_20990T Rosmarinic Acid CPR medium pass CPR__00001__sp_A0A2U1LIM9_NCPR1_ARTAN
codonopsis_lanceolata_Cl_chr03_21020T Rosmarinic Acid CPR medium pass CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
codonopsis_lanceolata_Cl_chr03_25620T Rosmarinic Acid CPR medium pass CPR__00003__sp_C5YJG8_NCPR_SORBI
codonopsis_lanceolata_Cl_chr05_40260T Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
codonopsis_lanceolata_Cl_chr05_40270T Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
codonopsis_lanceolata_Cl_chr08_21490T Rosmarinic Acid CPR medium pass CPR__00001__sp_A0A2U1LIM9_NCPR1_ARTAN