Codonopsis lanceolata (codonopsis_lanceolata)
Imported from atlas release summary for Codonopsis lanceolata.
2489
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2489
Candidate Genes
C4H
6.96%
C3'H/CYP98A
6.22%
BAHD
4.42%
UGT
4.21%
T3O
3.89%
IFS
3.87%
4CL
3.86%
CYP76
3.79%
Other Families
62.78%
More Families (97)
7DLGT
225
3.6%
UFGT
215
3.44%
POD
188
3.01%
CAS
171
2.74%
DWF4/CYP90B1
158
2.53%
TPS
147
2.35%
F3H
141
2.26%
F3'H/CYP75B
139
2.22%
CAD
136
2.18%
BBE
116
1.86%
GES
116
1.86%
STR
103
1.65%
BR6OX2/CYP85A2
101
1.62%
CYP71
92
1.47%
CODM/T6ODM
89
1.42%
NMT
85
1.36%
CYP90D1
84
1.34%
SGD
80
1.28%
H6H
78
1.25%
GS
78
1.25%
CSE
73
1.17%
TAT
68
1.09%
IO
67
1.07%
T16H
63
1.01%
G8O/G8H
51
0.82%
LAC
49
0.78%
SMT1/SMT2/SMT3
49
0.78%
F3'5'H/CYP75A
45
0.72%
CPD/CYP90A1
45
0.72%
TRI/TRII
44
0.7%
FNS
40
0.64%
HCT
40
0.64%
7DLH
39
0.62%
F5H/CYP84A
36
0.58%
CYP51G1
36
0.58%
IFR
34
0.54%
ANR
30
0.48%
DFR
29
0.46%
COR
28
0.45%
CCR
28
0.45%
PYKS
26
0.42%
SLS
25
0.4%
PMT
23
0.37%
NCS
23
0.37%
ANS/LDOX
22
0.35%
BR6OX1/CYP85A1
22
0.35%
COMT
19
0.3%
PAL
18
0.29%
ROT3/CYP90C1
18
0.29%
FPPS
18
0.29%
8HGO
17
0.27%
LAMT
16
0.26%
ISY
13
0.21%
RAS
13
0.21%
HPPR
12
0.19%
GGPPS
12
0.19%
CNMT
11
0.18%
MPO
11
0.18%
CPR
11
0.18%
DET2
11
0.18%
CYP80B1
10
0.16%
CHS
10
0.16%
SQE
9
0.14%
SQS/FDFT1
8
0.13%
HMGR
8
0.13%
CYP719
7
0.11%
AACT
7
0.11%
XMT_MXMT_DXMT
6
0.1%
6OMT_4OMT_SOMT
6
0.1%
16OMT
6
0.1%
FLS
6
0.1%
CCoAOMT
6
0.1%
DXS
6
0.1%
SMO1/SMO2
4
0.06%
CHI
3
0.05%
MVK
3
0.05%
MVD
3
0.05%
MCT/IspD
3
0.05%
DXR
3
0.05%
HDS/IspG
3
0.05%
PMK
3
0.05%
TYDC_DDC
2
0.03%
ADC
2
0.03%
ODC
2
0.03%
FK
2
0.03%
DWF1
2
0.03%
DWF7
2
0.03%
CPI1
2
0.03%
CMK/IspE
2
0.03%
HMGS
2
0.03%
GPPS
2
0.03%
TDC
1
0.02%
DWF5
1
0.02%
HYD1
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 715 | 20 | UGT (226) | View species results |
| Alkaloid pathway | 594 | 24 | 7DLGT (98) | View species results |
| Phenylpropanoid pathway | 439 | 12 | POD (165) | View species results |
| Flavonoid pathway | 303 | 11 | UFGT (197) | View species results |
| Rosmarinic acid pathway | 241 | 7 | C4H (105) | View species results |
| Steroid pathway | 197 | 15 | CAS (137) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2584 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 329 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| codonopsis_lanceolata_Cl_C14278_unscaffolded_00010T | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| codonopsis_lanceolata_Cl_C14278_unscaffolded_00020T | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| codonopsis_lanceolata_Cl_C18644_unscaffolded_00010T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr01_06070T | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| codonopsis_lanceolata_Cl_chr01_19910T | Flavonoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| codonopsis_lanceolata_Cl_chr01_21090T | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| codonopsis_lanceolata_Cl_chr01_29110T | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| codonopsis_lanceolata_Cl_chr01_29590T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr01_31880T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr01_36400T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr01_36430T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr01_37720T | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| codonopsis_lanceolata_Cl_chr01_40230T | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| codonopsis_lanceolata_Cl_chr01_42820T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr01_43630T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr01_43650T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr01_53250T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr01_54720T | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| codonopsis_lanceolata_Cl_chr01_55240T | Flavonoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| codonopsis_lanceolata_Cl_chr01_59620T | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| codonopsis_lanceolata_Cl_chr01_59630T | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| codonopsis_lanceolata_Cl_chr01_59810T | Flavonoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| codonopsis_lanceolata_Cl_chr02_06350T | Flavonoid | 4CL | low | borderline | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| codonopsis_lanceolata_Cl_chr02_06360T | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| codonopsis_lanceolata_Cl_chr02_06730T | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| codonopsis_lanceolata_Cl_chr02_07640T | Flavonoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| codonopsis_lanceolata_Cl_chr02_09210T | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| codonopsis_lanceolata_Cl_chr02_10520T | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| codonopsis_lanceolata_Cl_chr02_19600T | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| codonopsis_lanceolata_Cl_chr02_25380T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr02_39130T | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| codonopsis_lanceolata_Cl_chr02_42530T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr02_42980T | Flavonoid | 4CL | low | borderline | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| codonopsis_lanceolata_Cl_chr02_46090T | Flavonoid | 4CL | medium | pass | 4CL__00007__sp_Q42524_4CL1_ARATH |
| codonopsis_lanceolata_Cl_chr02_48690T | Flavonoid | 4CL | low | borderline | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr02_48700T | Flavonoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| codonopsis_lanceolata_Cl_chr02_49060T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr02_49070T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr02_53990T | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| codonopsis_lanceolata_Cl_chr02_61060T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr02_61070T | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| codonopsis_lanceolata_Cl_chr03_00950T | Flavonoid | 4CL | low | borderline | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| codonopsis_lanceolata_Cl_chr03_01660T | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| codonopsis_lanceolata_Cl_chr03_16360T | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| codonopsis_lanceolata_Cl_chr03_47280T | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| codonopsis_lanceolata_Cl_chr03_50060T | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| codonopsis_lanceolata_Cl_chr03_54400T | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| codonopsis_lanceolata_Cl_chr03_54410T | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| codonopsis_lanceolata_Cl_chr04_02390T | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| codonopsis_lanceolata_Cl_chr04_16970T | Flavonoid | 4CL | medium | pass | 4CL__00006__sp_P17814_4CL1_ORYSJ |