Codonopsis lanceolata (codonopsis_lanceolata)
Imported from atlas release summary for Codonopsis lanceolata.
2489
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2489
Candidate Genes
C4H
6.96%
C3'H/CYP98A
6.22%
BAHD
4.42%
UGT
4.21%
T3O
3.89%
IFS
3.87%
4CL
3.86%
CYP76
3.79%
Other Families
62.78%
More Families (97)
7DLGT
225
3.6%
UFGT
215
3.44%
POD
188
3.01%
CAS
171
2.74%
DWF4/CYP90B1
158
2.53%
TPS
147
2.35%
F3H
141
2.26%
F3'H/CYP75B
139
2.22%
CAD
136
2.18%
BBE
116
1.86%
GES
116
1.86%
STR
103
1.65%
BR6OX2/CYP85A2
101
1.62%
CYP71
92
1.47%
CODM/T6ODM
89
1.42%
NMT
85
1.36%
CYP90D1
84
1.34%
SGD
80
1.28%
H6H
78
1.25%
GS
78
1.25%
CSE
73
1.17%
TAT
68
1.09%
IO
67
1.07%
T16H
63
1.01%
G8O/G8H
51
0.82%
LAC
49
0.78%
SMT1/SMT2/SMT3
49
0.78%
F3'5'H/CYP75A
45
0.72%
CPD/CYP90A1
45
0.72%
TRI/TRII
44
0.7%
FNS
40
0.64%
HCT
40
0.64%
7DLH
39
0.62%
F5H/CYP84A
36
0.58%
CYP51G1
36
0.58%
IFR
34
0.54%
ANR
30
0.48%
DFR
29
0.46%
COR
28
0.45%
CCR
28
0.45%
PYKS
26
0.42%
SLS
25
0.4%
PMT
23
0.37%
NCS
23
0.37%
ANS/LDOX
22
0.35%
BR6OX1/CYP85A1
22
0.35%
COMT
19
0.3%
PAL
18
0.29%
ROT3/CYP90C1
18
0.29%
FPPS
18
0.29%
8HGO
17
0.27%
LAMT
16
0.26%
ISY
13
0.21%
RAS
13
0.21%
HPPR
12
0.19%
GGPPS
12
0.19%
CNMT
11
0.18%
MPO
11
0.18%
CPR
11
0.18%
DET2
11
0.18%
CYP80B1
10
0.16%
CHS
10
0.16%
SQE
9
0.14%
SQS/FDFT1
8
0.13%
HMGR
8
0.13%
CYP719
7
0.11%
AACT
7
0.11%
XMT_MXMT_DXMT
6
0.1%
6OMT_4OMT_SOMT
6
0.1%
16OMT
6
0.1%
FLS
6
0.1%
CCoAOMT
6
0.1%
DXS
6
0.1%
SMO1/SMO2
4
0.06%
CHI
3
0.05%
MVK
3
0.05%
MVD
3
0.05%
MCT/IspD
3
0.05%
DXR
3
0.05%
HDS/IspG
3
0.05%
PMK
3
0.05%
TYDC_DDC
2
0.03%
ADC
2
0.03%
ODC
2
0.03%
FK
2
0.03%
DWF1
2
0.03%
DWF7
2
0.03%
CPI1
2
0.03%
CMK/IspE
2
0.03%
HMGS
2
0.03%
GPPS
2
0.03%
TDC
1
0.02%
DWF5
1
0.02%
HYD1
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 715 | 20 | UGT (226) | View species results |
| Alkaloid pathway | 594 | 24 | 7DLGT (98) | View species results |
| Phenylpropanoid pathway | 439 | 12 | POD (165) | View species results |
| Flavonoid pathway | 303 | 11 | UFGT (197) | View species results |
| Rosmarinic acid pathway | 241 | 7 | C4H (105) | View species results |
| Steroid pathway | 197 | 15 | CAS (137) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2584 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 329 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| codonopsis_lanceolata_Cl_C00015_unscaffolded_00190T | Alkaloid | NMT | low | borderline | NMT__00019__sp_O22781_SUVH2_ARATH |
| codonopsis_lanceolata_Cl_C00680_unscaffolded_00010T | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| codonopsis_lanceolata_Cl_C00680_unscaffolded_00020T | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| codonopsis_lanceolata_Cl_C14036_unscaffolded_00010T | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| codonopsis_lanceolata_Cl_C17265_unscaffolded_00010T | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| codonopsis_lanceolata_Cl_C18614_unscaffolded_00010T | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| codonopsis_lanceolata_Cl_chr01_05360T | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| codonopsis_lanceolata_Cl_chr01_10460T | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| codonopsis_lanceolata_Cl_chr01_23050T | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| codonopsis_lanceolata_Cl_chr01_25780T | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| codonopsis_lanceolata_Cl_chr01_54340T | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| codonopsis_lanceolata_Cl_chr01_58660T | Alkaloid | NMT | low | borderline | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| codonopsis_lanceolata_Cl_chr02_13090T | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| codonopsis_lanceolata_Cl_chr02_32310T | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| codonopsis_lanceolata_Cl_chr02_32320T | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| codonopsis_lanceolata_Cl_chr02_38160T | Alkaloid | NMT | low | borderline | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| codonopsis_lanceolata_Cl_chr02_39220T | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| codonopsis_lanceolata_Cl_chr02_39230T | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| codonopsis_lanceolata_Cl_chr02_39240T | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| codonopsis_lanceolata_Cl_chr02_51120T | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| codonopsis_lanceolata_Cl_chr02_51320T | Alkaloid | NMT | medium | borderline | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| codonopsis_lanceolata_Cl_chr02_53250T | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| codonopsis_lanceolata_Cl_chr02_53440T | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| codonopsis_lanceolata_Cl_chr02_54980T | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| codonopsis_lanceolata_Cl_chr02_54990T | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| codonopsis_lanceolata_Cl_chr02_57110T | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| codonopsis_lanceolata_Cl_chr02_60090T | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| codonopsis_lanceolata_Cl_chr02_63370T | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| codonopsis_lanceolata_Cl_chr02_66420T | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| codonopsis_lanceolata_Cl_chr03_10150T | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| codonopsis_lanceolata_Cl_chr03_10920T | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| codonopsis_lanceolata_Cl_chr03_17720T | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| codonopsis_lanceolata_Cl_chr03_22570T | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| codonopsis_lanceolata_Cl_chr03_28510T | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| codonopsis_lanceolata_Cl_chr03_31530T | Alkaloid | NMT | medium | borderline | NMT__00058__sp_Q9FZN8_TCS1_CAMSI |
| codonopsis_lanceolata_Cl_chr03_33370T | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| codonopsis_lanceolata_Cl_chr03_35940T | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| codonopsis_lanceolata_Cl_chr03_44150T | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| codonopsis_lanceolata_Cl_chr03_44860T | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| codonopsis_lanceolata_Cl_chr03_44870T | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| codonopsis_lanceolata_Cl_chr03_44880T | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| codonopsis_lanceolata_Cl_chr03_52370T | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| codonopsis_lanceolata_Cl_chr03_55370T | Alkaloid | NMT | medium | pass | NMT__00023__sp_O82210_ANM12_ARATH |
| codonopsis_lanceolata_Cl_chr04_20870T | Alkaloid | NMT | low | borderline | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| codonopsis_lanceolata_Cl_chr04_23990T | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| codonopsis_lanceolata_Cl_chr04_29510T | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| codonopsis_lanceolata_Cl_chr04_37200T | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| codonopsis_lanceolata_Cl_chr04_37210T | Alkaloid | NMT | medium | borderline | NMT__00043__sp_Q8H0D2_DXMT1_COFAR |
| codonopsis_lanceolata_Cl_chr04_37620T | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| codonopsis_lanceolata_Cl_chr04_42480T | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |