Codonopsis lanceolata (codonopsis_lanceolata)
Imported from atlas release summary for Codonopsis lanceolata.
2890
Candidate Protein Records
2489
Pathway-Level Records
6249
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
6249
Family-Level Calls
C4H
6.96%
C3'H/CYP98A
6.22%
BAHD
4.42%
UGT
4.21%
T3O
3.89%
IFS
3.87%
4CL
3.86%
CYP76
3.79%
Other Families
62.78%
More Families (97)
7DLGT
225
3.6%
UFGT
215
3.44%
POD
188
3.01%
CAS
171
2.74%
DWF4/CYP90B1
158
2.53%
TPS
147
2.35%
F3H
141
2.26%
F3'H/CYP75B
139
2.22%
CAD
136
2.18%
BBE
116
1.86%
GES
116
1.86%
STR
103
1.65%
BR6OX2/CYP85A2
101
1.62%
CYP71
92
1.47%
CODM/T6ODM
89
1.42%
NMT
85
1.36%
CYP90D1
84
1.34%
SGD
80
1.28%
H6H
78
1.25%
GS
78
1.25%
CSE
73
1.17%
TAT
68
1.09%
IO
67
1.07%
T16H
63
1.01%
G8O/G8H
51
0.82%
LAC
49
0.78%
SMT1/SMT2/SMT3
49
0.78%
F3'5'H/CYP75A
45
0.72%
CPD/CYP90A1
45
0.72%
TRI/TRII
44
0.7%
FNS
40
0.64%
HCT
40
0.64%
7DLH
39
0.62%
F5H/CYP84A
36
0.58%
CYP51G1
36
0.58%
IFR
34
0.54%
ANR
30
0.48%
DFR
29
0.46%
COR
28
0.45%
CCR
28
0.45%
PYKS
26
0.42%
SLS
25
0.4%
PMT
23
0.37%
NCS
23
0.37%
ANS/LDOX
22
0.35%
BR6OX1/CYP85A1
22
0.35%
COMT
19
0.3%
PAL
18
0.29%
ROT3/CYP90C1
18
0.29%
FPPS
18
0.29%
8HGO
17
0.27%
LAMT
16
0.26%
ISY
13
0.21%
RAS
13
0.21%
HPPR
12
0.19%
GGPPS
12
0.19%
CNMT
11
0.18%
MPO
11
0.18%
CPR
11
0.18%
DET2
11
0.18%
CYP80B1
10
0.16%
CHS
10
0.16%
SQE
9
0.14%
SQS/FDFT1
8
0.13%
HMGR
8
0.13%
CYP719
7
0.11%
AACT
7
0.11%
XMT_MXMT_DXMT
6
0.1%
6OMT_4OMT_SOMT
6
0.1%
16OMT
6
0.1%
FLS
6
0.1%
CCoAOMT
6
0.1%
DXS
6
0.1%
SMO1/SMO2
4
0.06%
CHI
3
0.05%
MVK
3
0.05%
MVD
3
0.05%
MCT/IspD
3
0.05%
DXR
3
0.05%
HDS/IspG
3
0.05%
PMK
3
0.05%
TYDC_DDC
2
0.03%
ADC
2
0.03%
ODC
2
0.03%
FK
2
0.03%
DWF1
2
0.03%
DWF7
2
0.03%
CPI1
2
0.03%
CMK/IspE
2
0.03%
HMGS
2
0.03%
GPPS
2
0.03%
TDC
1
0.02%
DWF5
1
0.02%
HYD1
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 715 | 20 | UGT (226) | View species results |
| Alkaloid pathway | 594 | 24 | 7DLGT (98) | View species results |
| Phenylpropanoid pathway | 439 | 12 | POD (165) | View species results |
| Flavonoid pathway | 303 | 11 | UFGT (197) | View species results |
| Rosmarinic acid pathway | 241 | 7 | C4H (105) | View species results |
| Steroid pathway | 197 | 15 | CAS (137) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2584 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 329 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| codonopsis_lanceolata_Cl_chr01_48950T | Alkaloid | PMT | low | borderline |
| codonopsis_lanceolata_Cl_chr02_11180T | Alkaloid | PMT | low | borderline |
| codonopsis_lanceolata_Cl_chr02_11260T | Alkaloid | PMT | medium | pass |
| codonopsis_lanceolata_Cl_chr02_16410T | Alkaloid | PMT | low | borderline |
| codonopsis_lanceolata_Cl_chr02_39080T | Alkaloid | PMT | low | borderline |
| codonopsis_lanceolata_Cl_chr02_56310T | Alkaloid | PMT | low | borderline |
| codonopsis_lanceolata_Cl_chr03_49470T | Alkaloid | PMT | low | borderline |
| codonopsis_lanceolata_Cl_chr03_54860T | Alkaloid | PMT | medium | borderline |
| codonopsis_lanceolata_Cl_chr04_11740T | Alkaloid | PMT | medium | pass |
| codonopsis_lanceolata_Cl_chr04_21180T | Alkaloid | PMT | low | borderline |
| codonopsis_lanceolata_Cl_chr04_21210T | Alkaloid | PMT | low | borderline |
| codonopsis_lanceolata_Cl_chr04_35360T | Alkaloid | PMT | low | borderline |
| codonopsis_lanceolata_Cl_chr04_37260T | Alkaloid | PMT | low | borderline |
| codonopsis_lanceolata_Cl_chr04_37300T | Alkaloid | PMT | low | borderline |
| codonopsis_lanceolata_Cl_chr05_42770T | Alkaloid | PMT | low | borderline |
| codonopsis_lanceolata_Cl_chr06_31050T | Alkaloid | PMT | low | borderline |
| codonopsis_lanceolata_Cl_chr08_08980T | Alkaloid | PMT | low | borderline |
| codonopsis_lanceolata_Cl_chr08_14510T | Alkaloid | PMT | medium | pass |
| codonopsis_lanceolata_Cl_chr08_24710T | Alkaloid | PMT | medium | pass |
| codonopsis_lanceolata_Cl_C03177_unscaffolded_00020T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_C17675_unscaffolded_00010T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr01_56430T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr01_62710T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr01_62720T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr02_15890T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr02_36490T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr02_52450T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr03_21100T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr04_24460T | Alkaloid | PYKS | medium | pass |
| codonopsis_lanceolata_Cl_chr04_24550T | Alkaloid | PYKS | medium | pass |
| codonopsis_lanceolata_Cl_chr04_39660T | Alkaloid | PYKS | high | pass |
| codonopsis_lanceolata_Cl_chr04_39670T | Alkaloid | PYKS | high | pass |
| codonopsis_lanceolata_Cl_chr05_01270T | Alkaloid | PYKS | high | pass |
| codonopsis_lanceolata_Cl_chr05_03910T | Alkaloid | PYKS | high | pass |
| codonopsis_lanceolata_Cl_chr05_45740T | Alkaloid | PYKS | high | pass |
| codonopsis_lanceolata_Cl_chr06_10900T | Alkaloid | PYKS | high | pass |
| codonopsis_lanceolata_Cl_chr06_25670T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr06_42530T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr07_07720T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr07_22860T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr07_22890T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr08_11670T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr08_20360T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr08_24170T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_chr08_31770T | Alkaloid | PYKS | low | borderline |
| codonopsis_lanceolata_Cl_C00255_unscaffolded_00030T | Alkaloid | SGD | medium | pass |
| codonopsis_lanceolata_Cl_C05666_unscaffolded_00010T | Alkaloid | SGD | medium | pass |
| codonopsis_lanceolata_Cl_C13374_unscaffolded_00020T | Alkaloid | SGD | medium | pass |
| codonopsis_lanceolata_Cl_C14621_unscaffolded_00020T | Alkaloid | SGD | medium | pass |
| codonopsis_lanceolata_Cl_C15048_unscaffolded_00010T | Alkaloid | SGD | medium | pass |