PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

4400
Candidate Protein Records
3645
Pathway-Level Records
9305
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.94% Alkaloid pathway 22.61% Phenylpropanoid pathway 22.61% Flavonoid pathway 11.28% Rosmarinic acid pathway 8.42% Steroid pathway 6.15%
Family Distribution
C4H 6.96% C3'H/CYP98A 6.11% BAHD 5.39% CYP76 4.07% IFS 4.05% T3O 3.86% F3H 3.63% POD 3.61%
Other Families 62.3%
More Families (98)
UGT 316 3.4% 4CL 315 3.39% 7DLGT 282 3.03% UFGT 276 2.97% NMT 204 2.19% DWF4/CYP90B1 192 2.06% BR6OX2/CYP85A2 185 1.99% CODM/T6ODM 177 1.9% F3'H/CYP75B 169 1.82% H6H 166 1.78% STR 166 1.78% CAD 135 1.45% LAC 134 1.44% CYP71 126 1.35% CAS 121 1.3% CYP90D1 116 1.25% TRI/TRII 114 1.23% SMT1/SMT2/SMT3 113 1.21% TPS 105 1.13% GES 100 1.07% HCT 95 1.02% CSE 93 1.0% GS 86 0.92% COMT 84 0.9% 7DLH 82 0.88% RAS 78 0.84% T16H 74 0.8% IFR 67 0.72% PYKS 64 0.69% G8O/G8H 63 0.68% IO 63 0.68% 16OMT 61 0.66% F3'5'H/CYP75A 61 0.66% F5H/CYP84A 57 0.61% BBE 56 0.6% ANR 53 0.57% NCS 51 0.55% SGD 50 0.54% FNS 50 0.54% CPD/CYP90A1 50 0.54% CCR 46 0.49% COR 45 0.48% TAT 45 0.48% PMT 44 0.47% ROT3/CYP90C1 41 0.44% CYP51G1 40 0.43% PAL 39 0.42% SLS 37 0.4% BR6OX1/CYP85A1 37 0.4% GGPPS 29 0.31% 8HGO 27 0.29% CNMT 27 0.29% DFR 27 0.29% ANS/LDOX 26 0.28% SQE 26 0.28% LAMT 23 0.25% FPPS 22 0.24% MPO 20 0.21% CPR 20 0.21% CHS 18 0.19% CCoAOMT 17 0.18% SQS/FDFT1 17 0.18% ISY 16 0.17% CYP719 15 0.16% SMO1/SMO2 15 0.16% TYDC_DDC 14 0.15% HMGR 14 0.15% CYP80B1 13 0.14% AACT 13 0.14% DXS 13 0.14% HPPR 12 0.13% MVD 12 0.13% DET2 11 0.12% MVK 11 0.12% TDC 10 0.11% HMGS 9 0.1% CHI 8 0.09% ADC 7 0.08% MCT/IspD 7 0.08% CYP80F1 6 0.06% FLS 6 0.06% HDR/IspH 6 0.06% DXR 6 0.06% ODC 5 0.05% 6OMT_4OMT_SOMT 5 0.05% XMT_MXMT_DXMT 5 0.05% DWF1 5 0.05% DWF5 5 0.05% MDS/IspF 5 0.05% CPI1 3 0.03% HYD1 3 0.03% FK 2 0.02% DWF7 2 0.02% CMK/IspE 2 0.02% HDS/IspG 2 0.02% IDI 2 0.02% GPPS 2 0.02% PMK 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
Reset
Protein/Isoform Record Pathway Family Confidence Status Best Target
GbarD09G0025980 Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
GbarD10G0005250 Rosmarinic Acid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
GbarD10G0007300 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
GbarD10G0014900 Rosmarinic Acid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
GbarD10G0015610 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
GbarD10G0019620 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
GbarD11G0002430 Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
GbarD11G0004030 Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
GbarD11G0018140 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
GbarD11G0033840 Rosmarinic Acid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
GbarD12G0016760 Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
GbarD13G0009310 Rosmarinic Acid 4CL low borderline 4CL__00018__sp_Q9S777_4CL3_ARATH
GbarD13G0020080 Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
GbarD13G0025990 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Gbarscaffold257_obj_D020002830 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY