Gossypium barbadense (gossypium_barbadense)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 28.94% Alkaloid pathway 22.61% Phenylpropanoid pathway 22.61% Flavonoid pathway 11.28% Rosmarinic acid pathway 8.42% Steroid pathway 6.15%

Family Distribution

3645 Candidate Genes

C4H 6.96% C3'H/CYP98A 6.11% BAHD 5.39% CYP76 4.07% IFS 4.05% T3O 3.86% F3H 3.63% POD 3.61%

Other Families 62.3%

More Families (98)

UGT 316 3.4% 4CL 315 3.39% 7DLGT 282 3.03% UFGT 276 2.97% NMT 204 2.19% DWF4/CYP90B1 192 2.06% BR6OX2/CYP85A2 185 1.99% CODM/T6ODM 177 1.9% F3'H/CYP75B 169 1.82% H6H 166 1.78% STR 166 1.78% CAD 135 1.45% LAC 134 1.44% CYP71 126 1.35% CAS 121 1.3% CYP90D1 116 1.25% TRI/TRII 114 1.23% SMT1/SMT2/SMT3 113 1.21% TPS 105 1.13% GES 100 1.07% HCT 95 1.02% CSE 93 1.0% GS 86 0.92% COMT 84 0.9% 7DLH 82 0.88% RAS 78 0.84% T16H 74 0.8% IFR 67 0.72% PYKS 64 0.69% G8O/G8H 63 0.68% IO 63 0.68% 16OMT 61 0.66% F3'5'H/CYP75A 61 0.66% F5H/CYP84A 57 0.61% BBE 56 0.6% ANR 53 0.57% NCS 51 0.55% SGD 50 0.54% FNS 50 0.54% CPD/CYP90A1 50 0.54% CCR 46 0.49% COR 45 0.48% TAT 45 0.48% PMT 44 0.47% ROT3/CYP90C1 41 0.44% CYP51G1 40 0.43% PAL 39 0.42% SLS 37 0.4% BR6OX1/CYP85A1 37 0.4% GGPPS 29 0.31% 8HGO 27 0.29% CNMT 27 0.29% DFR 27 0.29% ANS/LDOX 26 0.28% SQE 26 0.28% LAMT 23 0.25% FPPS 22 0.24% MPO 20 0.21% CPR 20 0.21% CHS 18 0.19% CCoAOMT 17 0.18% SQS/FDFT1 17 0.18% ISY 16 0.17% CYP719 15 0.16% SMO1/SMO2 15 0.16% TYDC_DDC 14 0.15% HMGR 14 0.15% CYP80B1 13 0.14% AACT 13 0.14% DXS 13 0.14% HPPR 12 0.13% MVD 12 0.13% DET2 11 0.12% MVK 11 0.12% TDC 10 0.11% HMGS 9 0.1% CHI 8 0.09% ADC 7 0.08% MCT/IspD 7 0.08% CYP80F1 6 0.06% FLS 6 0.06% HDR/IspH 6 0.06% DXR 6 0.06% ODC 5 0.05% 6OMT_4OMT_SOMT 5 0.05% XMT_MXMT_DXMT 5 0.05% DWF1 5 0.05% DWF5 5 0.05% MDS/IspF 5 0.05% CPI1 3 0.03% HYD1 3 0.03% FK 2 0.02% DWF7 2 0.02% CMK/IspE 2 0.02% HDS/IspG 2 0.02% IDI 2 0.02% GPPS 2 0.02% PMK 2 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	1055	21	BAHD (388)	View species results
Alkaloid pathway	824	25	7DLGT (140)	View species results
Phenylpropanoid pathway	824	12	POD (325)	View species results
Flavonoid pathway	411	13	UFGT (256)	View species results
Rosmarinic acid pathway	307	7	C4H (123)	View species results
Steroid pathway	224	12	CAS (104)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	3759	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	675	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: BAHD

Gene	Pathway	Family	Confidence	Status	Best Target
GbarA04G0015190	Terpenoid	BAHD	medium	pass	BAHD__00052__sp_Q8GWG0_GPAT9_ARATH
GbarA04G0016690	Terpenoid	BAHD	medium	pass	BAHD__00032__sp_P0DO84_AT_STRNX
GbarA04G0017110	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
GbarA04G0017550	Terpenoid	BAHD	medium	pass	BAHD__00068__sp_Q9C533_ZDHC1_ARATH
GbarA05G0005480	Terpenoid	BAHD	medium	pass	BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
GbarA05G0005620	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarA05G0005940	Terpenoid	BAHD	medium	pass	BAHD__00095__sp_Q9SZ58_BRAT1_ARATH
GbarA05G0007550	Terpenoid	BAHD	low	borderline	BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
GbarA05G0011720	Terpenoid	BAHD	medium	pass	BAHD__00012__sp_A1XWY7_CFAT_PETHY
GbarA05G0011730	Terpenoid	BAHD	medium	pass	BAHD__00012__sp_A1XWY7_CFAT_PETHY
GbarA05G0011740	Terpenoid	BAHD	medium	pass	BAHD__00012__sp_A1XWY7_CFAT_PETHY
GbarA05G0011870	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarA05G0013850	Terpenoid	BAHD	low	borderline	BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
GbarA05G0017870	Terpenoid	BAHD	medium	pass	BAHD__00050__sp_Q6DR03_ZDHC3_ARATH
GbarA05G0018010	Terpenoid	BAHD	medium	pass	BAHD__00032__sp_P0DO84_AT_STRNX
GbarA05G0018810	Terpenoid	BAHD	medium	pass	BAHD__00023__sp_O22975_LPAAT_ARATH
GbarA05G0020070	Terpenoid	BAHD	medium	pass	BAHD__00025__sp_O64810_SCP10_ARATH
GbarA05G0021160	Terpenoid	BAHD	medium	pass	BAHD__00026__sp_O64811_SCP9_ARATH
GbarA05G0021170	Terpenoid	BAHD	medium	pass	BAHD__00026__sp_O64811_SCP9_ARATH
GbarA05G0024160	Terpenoid	BAHD	medium	pass	BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarA05G0026080	Terpenoid	BAHD	medium	pass	BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
GbarA05G0027290	Terpenoid	BAHD	medium	pass	BAHD__00089__sp_Q9SB58_ZDH19_ARATH
GbarA05G0029720	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
GbarA05G0031580	Terpenoid	BAHD	medium	pass	BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
GbarA05G0033160	Terpenoid	BAHD	low	borderline	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarA05G0034400	Terpenoid	BAHD	low	borderline	BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarA05G0034640	Terpenoid	BAHD	medium	pass	BAHD__00031__sp_P0DO25_AT9_ACTDE
GbarA05G0035240	Terpenoid	BAHD	medium	pass	BAHD__00074__sp_Q9FFQ7_FACT_ARATH
GbarA05G0036140	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
GbarA05G0036800	Terpenoid	BAHD	medium	pass	BAHD__00071__sp_Q9CAY3_GPAT5_ARATH
GbarA05G0039220	Terpenoid	BAHD	low	borderline	BAHD__00025__sp_O64810_SCP10_ARATH
GbarA05G0043070	Terpenoid	BAHD	low	borderline	BAHD__00032__sp_P0DO84_AT_STRNX
GbarA05G0043080	Terpenoid	BAHD	low	borderline	BAHD__00024__sp_O23393_BIA1_ARATH
GbarA05G0043140	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
GbarA06G0000700	Terpenoid	BAHD	medium	pass	BAHD__00002__sp_A0A068BIF1_AT9_ACTER
GbarA06G0000830	Terpenoid	BAHD	medium	pass	BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
GbarA06G0001110	Terpenoid	BAHD	medium	pass	BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
GbarA06G0001160	Terpenoid	BAHD	medium	pass	BAHD__00058__sp_Q8LG50_LPAT2_ARATH
GbarA06G0001950	Terpenoid	BAHD	medium	pass	BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarA06G0001960	Terpenoid	BAHD	medium	pass	BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarA06G0001990	Terpenoid	BAHD	low	borderline	BAHD__00008__sp_A0A2Z5CVQ4_AT1_CROXC
GbarA06G0004340	Terpenoid	BAHD	medium	pass	BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
GbarA06G0005640	Terpenoid	BAHD	low	borderline	BAHD__00081__sp_Q9LJB4_5MAT_ARATH
GbarA06G0006540	Terpenoid	BAHD	low	borderline	BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
GbarA06G0007680	Terpenoid	BAHD	medium	pass	BAHD__00092__sp_Q9SU91_LPXA_ARATH
GbarA06G0008110	Terpenoid	BAHD	medium	pass	BAHD__00075__sp_Q9FJB4_GPC1_ARATH
GbarA06G0008170	Terpenoid	BAHD	medium	pass	BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
GbarA06G0010590	Terpenoid	BAHD	medium	pass	BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
GbarA06G0013910	Terpenoid	BAHD	low	borderline	BAHD__00028__sp_O80467_SDT_ARATH
GbarA06G0014520	Terpenoid	BAHD	medium	pass	BAHD__00055__sp_Q8H780_SCP13_ARATH