Gossypium barbadense (gossypium_barbadense)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 28.94% Alkaloid pathway 22.61% Phenylpropanoid pathway 22.61% Flavonoid pathway 11.28% Rosmarinic acid pathway 8.42% Steroid pathway 6.15%

Family Distribution

3645 Candidate Genes

C4H 6.96% C3'H/CYP98A 6.11% BAHD 5.39% CYP76 4.07% IFS 4.05% T3O 3.86% F3H 3.63% POD 3.61%

Other Families 62.3%

More Families (98)

UGT 316 3.4% 4CL 315 3.39% 7DLGT 282 3.03% UFGT 276 2.97% NMT 204 2.19% DWF4/CYP90B1 192 2.06% BR6OX2/CYP85A2 185 1.99% CODM/T6ODM 177 1.9% F3'H/CYP75B 169 1.82% H6H 166 1.78% STR 166 1.78% CAD 135 1.45% LAC 134 1.44% CYP71 126 1.35% CAS 121 1.3% CYP90D1 116 1.25% TRI/TRII 114 1.23% SMT1/SMT2/SMT3 113 1.21% TPS 105 1.13% GES 100 1.07% HCT 95 1.02% CSE 93 1.0% GS 86 0.92% COMT 84 0.9% 7DLH 82 0.88% RAS 78 0.84% T16H 74 0.8% IFR 67 0.72% PYKS 64 0.69% G8O/G8H 63 0.68% IO 63 0.68% 16OMT 61 0.66% F3'5'H/CYP75A 61 0.66% F5H/CYP84A 57 0.61% BBE 56 0.6% ANR 53 0.57% NCS 51 0.55% SGD 50 0.54% FNS 50 0.54% CPD/CYP90A1 50 0.54% CCR 46 0.49% COR 45 0.48% TAT 45 0.48% PMT 44 0.47% ROT3/CYP90C1 41 0.44% CYP51G1 40 0.43% PAL 39 0.42% SLS 37 0.4% BR6OX1/CYP85A1 37 0.4% GGPPS 29 0.31% 8HGO 27 0.29% CNMT 27 0.29% DFR 27 0.29% ANS/LDOX 26 0.28% SQE 26 0.28% LAMT 23 0.25% FPPS 22 0.24% MPO 20 0.21% CPR 20 0.21% CHS 18 0.19% CCoAOMT 17 0.18% SQS/FDFT1 17 0.18% ISY 16 0.17% CYP719 15 0.16% SMO1/SMO2 15 0.16% TYDC_DDC 14 0.15% HMGR 14 0.15% CYP80B1 13 0.14% AACT 13 0.14% DXS 13 0.14% HPPR 12 0.13% MVD 12 0.13% DET2 11 0.12% MVK 11 0.12% TDC 10 0.11% HMGS 9 0.1% CHI 8 0.09% ADC 7 0.08% MCT/IspD 7 0.08% CYP80F1 6 0.06% FLS 6 0.06% HDR/IspH 6 0.06% DXR 6 0.06% ODC 5 0.05% 6OMT_4OMT_SOMT 5 0.05% XMT_MXMT_DXMT 5 0.05% DWF1 5 0.05% DWF5 5 0.05% MDS/IspF 5 0.05% CPI1 3 0.03% HYD1 3 0.03% FK 2 0.02% DWF7 2 0.02% CMK/IspE 2 0.02% HDS/IspG 2 0.02% IDI 2 0.02% GPPS 2 0.02% PMK 2 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	1055	21	BAHD (388)	View species results
Alkaloid pathway	824	25	7DLGT (140)	View species results
Phenylpropanoid pathway	824	12	POD (325)	View species results
Flavonoid pathway	411	13	UFGT (256)	View species results
Rosmarinic acid pathway	307	7	C4H (123)	View species results
Steroid pathway	224	12	CAS (104)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	3759	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	675	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: BAHD

Gene	Pathway	Family	Confidence	Status	Best Target
GbarA06G0017840	Terpenoid	BAHD	medium	pass	BAHD__00093__sp_Q9SV07_ASAT1_ARATH
GbarA06G0022080	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarA06G0022090	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarA06G0022110	Terpenoid	BAHD	low	borderline	BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
GbarA06G0022150	Terpenoid	BAHD	medium	pass	BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
GbarA06G0022170	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarA06G0022190	Terpenoid	BAHD	low	borderline	BAHD__00030__sp_O80816_GLC_ARATH
GbarA06G0023950	Terpenoid	BAHD	medium	pass	BAHD__00017__sp_F4IDU4_MBOA1_ARATH
GbarA07G0000030	Terpenoid	BAHD	medium	pass	BAHD__00017__sp_F4IDU4_MBOA1_ARATH
GbarA07G0001320	Terpenoid	BAHD	medium	pass	BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE
GbarA07G0003210	Terpenoid	BAHD	medium	pass	BAHD__00025__sp_O64810_SCP10_ARATH
GbarA07G0005500	Terpenoid	BAHD	medium	pass	BAHD__00074__sp_Q9FFQ7_FACT_ARATH
GbarA07G0009080	Terpenoid	BAHD	medium	pass	BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH
GbarA07G0010700	Terpenoid	BAHD	medium	pass	BAHD__00032__sp_P0DO84_AT_STRNX
GbarA07G0011680	Terpenoid	BAHD	medium	pass	BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
GbarA07G0012600	Terpenoid	BAHD	medium	pass	BAHD__00025__sp_O64810_SCP10_ARATH
GbarA07G0012610	Terpenoid	BAHD	low	borderline	BAHD__00025__sp_O64810_SCP10_ARATH
GbarA07G0014610	Terpenoid	BAHD	medium	pass	BAHD__00048__sp_Q5M757_ZDH15_ARATH
GbarA07G0014920	Terpenoid	BAHD	medium	pass	BAHD__00047__sp_Q5KS41_WSD11_ARATH
GbarA07G0014930	Terpenoid	BAHD	medium	pass	BAHD__00087__sp_Q9M3B1_WSD6_ARATH
GbarA07G0014940	Terpenoid	BAHD	medium	pass	BAHD__00047__sp_Q5KS41_WSD11_ARATH
GbarA07G0015870	Terpenoid	BAHD	medium	pass	BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
GbarA07G0017660	Terpenoid	BAHD	medium	pass	BAHD__00026__sp_O64811_SCP9_ARATH
GbarA07G0024440	Terpenoid	BAHD	low	borderline	BAHD__00025__sp_O64810_SCP10_ARATH
GbarA07G0025320	Terpenoid	BAHD	medium	pass	BAHD__00081__sp_Q9LJB4_5MAT_ARATH
GbarA07G0026250	Terpenoid	BAHD	medium	pass	BAHD__00074__sp_Q9FFQ7_FACT_ARATH
GbarA08G0000060	Terpenoid	BAHD	medium	pass	BAHD__00097__sp_Q9ZV87_NAPES_ARATH
GbarA08G0001720	Terpenoid	BAHD	medium	pass	BAHD__00040__sp_Q41745_LPAT_MAIZE
GbarA08G0005140	Terpenoid	BAHD	medium	pass	BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
GbarA08G0006160	Terpenoid	BAHD	medium	pass	BAHD__00093__sp_Q9SV07_ASAT1_ARATH
GbarA08G0012220	Terpenoid	BAHD	medium	pass	BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarA08G0014370	Terpenoid	BAHD	medium	pass	BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
GbarA08G0016810	Terpenoid	BAHD	medium	pass	BAHD__00025__sp_O64810_SCP10_ARATH
GbarA08G0017930	Terpenoid	BAHD	medium	pass	BAHD__00034__sp_P10349_GPAT2_CUCMO
GbarA08G0018440	Terpenoid	BAHD	medium	pass	BAHD__00032__sp_P0DO84_AT_STRNX
GbarA08G0018450	Terpenoid	BAHD	medium	pass	BAHD__00020__sp_K4D9Y4_ASAT3_SOLLC
GbarA08G0019070	Terpenoid	BAHD	low	borderline	BAHD__00074__sp_Q9FFQ7_FACT_ARATH
GbarA08G0019900	Terpenoid	BAHD	medium	pass	BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
GbarA08G0022760	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
GbarA08G0023220	Terpenoid	BAHD	medium	pass	BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
GbarA08G0025930	Terpenoid	BAHD	medium	pass	BAHD__00025__sp_O64810_SCP10_ARATH
GbarA08G0025990	Terpenoid	BAHD	medium	pass	BAHD__00062__sp_Q93V61_LCAT3_ARATH
GbarA08G0026040	Terpenoid	BAHD	medium	pass	BAHD__00030__sp_O80816_GLC_ARATH
GbarA08G0027950	Terpenoid	BAHD	medium	pass	BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
GbarA09G0004180	Terpenoid	BAHD	medium	pass	BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
GbarA09G0005020	Terpenoid	BAHD	medium	pass	BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarA09G0005620	Terpenoid	BAHD	medium	pass	BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
GbarA09G0008460	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarA09G0009870	Terpenoid	BAHD	medium	pass	BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
GbarA09G0010570	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH