PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

3645
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.94% Alkaloid pathway 22.61% Phenylpropanoid pathway 22.61% Flavonoid pathway 11.28% Rosmarinic acid pathway 8.42% Steroid pathway 6.15%
Family Distribution
C4H 6.96% C3'H/CYP98A 6.11% BAHD 5.39% CYP76 4.07% IFS 4.05% T3O 3.86% F3H 3.63% POD 3.61%
Other Families 62.3%
More Families (98)
UGT 316 3.4% 4CL 315 3.39% 7DLGT 282 3.03% UFGT 276 2.97% NMT 204 2.19% DWF4/CYP90B1 192 2.06% BR6OX2/CYP85A2 185 1.99% CODM/T6ODM 177 1.9% F3'H/CYP75B 169 1.82% H6H 166 1.78% STR 166 1.78% CAD 135 1.45% LAC 134 1.44% CYP71 126 1.35% CAS 121 1.3% CYP90D1 116 1.25% TRI/TRII 114 1.23% SMT1/SMT2/SMT3 113 1.21% TPS 105 1.13% GES 100 1.07% HCT 95 1.02% CSE 93 1.0% GS 86 0.92% COMT 84 0.9% 7DLH 82 0.88% RAS 78 0.84% T16H 74 0.8% IFR 67 0.72% PYKS 64 0.69% G8O/G8H 63 0.68% IO 63 0.68% 16OMT 61 0.66% F3'5'H/CYP75A 61 0.66% F5H/CYP84A 57 0.61% BBE 56 0.6% ANR 53 0.57% NCS 51 0.55% SGD 50 0.54% FNS 50 0.54% CPD/CYP90A1 50 0.54% CCR 46 0.49% COR 45 0.48% TAT 45 0.48% PMT 44 0.47% ROT3/CYP90C1 41 0.44% CYP51G1 40 0.43% PAL 39 0.42% SLS 37 0.4% BR6OX1/CYP85A1 37 0.4% GGPPS 29 0.31% 8HGO 27 0.29% CNMT 27 0.29% DFR 27 0.29% ANS/LDOX 26 0.28% SQE 26 0.28% LAMT 23 0.25% FPPS 22 0.24% MPO 20 0.21% CPR 20 0.21% CHS 18 0.19% CCoAOMT 17 0.18% SQS/FDFT1 17 0.18% ISY 16 0.17% CYP719 15 0.16% SMO1/SMO2 15 0.16% TYDC_DDC 14 0.15% HMGR 14 0.15% CYP80B1 13 0.14% AACT 13 0.14% DXS 13 0.14% HPPR 12 0.13% MVD 12 0.13% DET2 11 0.12% MVK 11 0.12% TDC 10 0.11% HMGS 9 0.1% CHI 8 0.09% ADC 7 0.08% MCT/IspD 7 0.08% CYP80F1 6 0.06% FLS 6 0.06% HDR/IspH 6 0.06% DXR 6 0.06% ODC 5 0.05% 6OMT_4OMT_SOMT 5 0.05% XMT_MXMT_DXMT 5 0.05% DWF1 5 0.05% DWF5 5 0.05% MDS/IspF 5 0.05% CPI1 3 0.03% HYD1 3 0.03% FK 2 0.02% DWF7 2 0.02% CMK/IspE 2 0.02% HDS/IspG 2 0.02% IDI 2 0.02% GPPS 2 0.02% PMK 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Gene Pathway Family Confidence Status Best Target
GbarA09G0013160 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarA09G0014040 Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
GbarA09G0018010 Terpenoid BAHD medium pass BAHD__00027__sp_O80437_GPAT6_ARATH
GbarA09G0021080 Terpenoid BAHD medium pass BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
GbarA09G0025830 Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
GbarA10G0002460 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarA10G0004600 Terpenoid BAHD medium pass BAHD__00062__sp_Q93V61_LCAT3_ARATH
GbarA10G0007070 Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
GbarA10G0014110 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
GbarA10G0015300 Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
GbarA10G0015830 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarA10G0015960 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarA10G0019130 Terpenoid BAHD medium pass BAHD__00015__sp_D2Y3X2_PUN1_CAPAN
GbarA10G0021920 Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
GbarA10G0022230 Terpenoid BAHD low borderline BAHD__00095__sp_Q9SZ58_BRAT1_ARATH
GbarA10G0022350 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
GbarA10G0022520 Terpenoid BAHD medium pass BAHD__00042__sp_Q500Z2_ZDH20_ARATH
GbarA10G0024490 Terpenoid BAHD medium pass BAHD__00071__sp_Q9CAY3_GPAT5_ARATH
GbarA10G0025800 Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarA10G0026480 Terpenoid BAHD medium pass BAHD__00031__sp_P0DO25_AT9_ACTDE
GbarA11G0001050 Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarA11G0002260 Terpenoid BAHD low borderline BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
GbarA11G0002970 Terpenoid BAHD medium pass BAHD__00034__sp_P10349_GPAT2_CUCMO
GbarA11G0004100 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarA11G0005810 Terpenoid BAHD medium pass BAHD__00021__sp_K7K424_DAT2D_SOYBN
GbarA11G0005820 Terpenoid BAHD medium pass BAHD__00021__sp_K7K424_DAT2D_SOYBN
GbarA11G0005830 Terpenoid BAHD medium pass BAHD__00021__sp_K7K424_DAT2D_SOYBN
GbarA11G0005840 Terpenoid BAHD medium pass BAHD__00021__sp_K7K424_DAT2D_SOYBN
GbarA11G0005850 Terpenoid BAHD medium pass BAHD__00021__sp_K7K424_DAT2D_SOYBN
GbarA11G0007070 Terpenoid BAHD medium pass BAHD__00004__sp_A0A0M4FCN7_RAM2_PETHY
GbarA11G0007540 Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
GbarA11G0007550 Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
GbarA11G0008310 Terpenoid BAHD medium pass BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
GbarA11G0008620 Terpenoid BAHD medium pass BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
GbarA11G0009310 Terpenoid BAHD medium pass BAHD__00083__sp_Q9LMM0_GPAT4_ARATH
GbarA11G0010850 Terpenoid BAHD medium pass BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC
GbarA11G0010870 Terpenoid BAHD medium pass BAHD__00069__sp_Q9C5W0_DGAT3_ARATH
GbarA11G0015000 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarA11G0017880 Terpenoid BAHD medium pass BAHD__00051__sp_Q7XA86_ZDH11_ARATH
GbarA11G0020380 Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarA11G0020400 Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarA11G0023730 Terpenoid BAHD medium pass BAHD__00089__sp_Q9SB58_ZDH19_ARATH
GbarA11G0024550 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
GbarA11G0030100 Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
GbarA11G0037310 Terpenoid BAHD medium pass BAHD__00063__sp_Q93VV0_ZDHC6_ARATH
GbarA12G0008990 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
GbarA12G0010400 Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
GbarA12G0011670 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
GbarA12G0011810 Terpenoid BAHD medium pass BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
GbarA12G0011910 Terpenoid BAHD medium pass BAHD__00059__sp_Q8S8S2_LPCT2_ARATH